Variant report

Variant	rs6954055
Chromosome Location	chr7:126294960-126294961
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126287875..126289715-chr7:126294505..126296060,2	K562	blood:

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs10255379	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10487454	0.85[JPT][hapmap]
rs10487455	0.85[JPT][hapmap]
rs10487456	0.85[JPT][hapmap]
rs10808224	0.85[JPT][hapmap]
rs10954120	0.85[JPT][hapmap]
rs10954131	0.85[JPT][hapmap]
rs11486997	0.85[JPT][hapmap]
rs11971474	0.85[JPT][hapmap]
rs12154335	0.84[JPT][hapmap]
rs12532564	0.85[JPT][hapmap]
rs12533174	0.85[JPT][hapmap]
rs12533463	0.85[JPT][hapmap]
rs12533543	0.84[JPT][hapmap]
rs12536122	0.85[JPT][hapmap]
rs12537689	0.85[JPT][hapmap]
rs12538680	0.85[JPT][hapmap]
rs12538710	0.85[JPT][hapmap]
rs12538744	0.83[JPT][hapmap]
rs12538796	0.84[JPT][hapmap]
rs12540159	0.85[JPT][hapmap]
rs12666621	0.88[JPT][hapmap]
rs12674181	0.85[JPT][hapmap]
rs12706740	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13241983	0.80[JPT][hapmap]
rs13243112	0.80[JPT][hapmap]
rs1361986	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1361989	0.85[JPT][hapmap]
rs1361990	0.84[JPT][hapmap]
rs1419476	0.85[JPT][hapmap]
rs1419479	0.84[JPT][hapmap]
rs1419480	0.84[JPT][hapmap]
rs1419481	0.85[JPT][hapmap]
rs1419484	0.84[JPT][hapmap]
rs1419485	0.84[JPT][hapmap]
rs1419486	0.85[JPT][hapmap]
rs1419487	0.85[JPT][hapmap]
rs1419488	0.85[JPT][hapmap]
rs1419489	0.85[JPT][hapmap]
rs1419494	0.85[JPT][hapmap]
rs1419495	0.85[JPT][hapmap]
rs1419498	0.90[JPT][hapmap]
rs1468155	0.84[JPT][hapmap]
rs1468156	0.85[JPT][hapmap]
rs1579215	0.84[JPT][hapmap]
rs17609121	0.85[JPT][hapmap]
rs17610345	0.85[JPT][hapmap]
rs17610889	0.85[JPT][hapmap]
rs17612358	0.85[JPT][hapmap]
rs17682376	0.85[JPT][hapmap]
rs17683130	0.85[JPT][hapmap]
rs17683331	0.85[JPT][hapmap]
rs17683777	0.85[JPT][hapmap]
rs17684332	0.85[JPT][hapmap]
rs17690706	0.85[JPT][hapmap]
rs1815971	0.85[JPT][hapmap]
rs1894733	0.85[JPT][hapmap]
rs1946112	0.84[JPT][hapmap]
rs2027988	0.84[JPT][hapmap]
rs2027989	0.85[JPT][hapmap]
rs2073862	0.85[JPT][hapmap]
rs2106309	0.85[JPT][hapmap]
rs2106310	0.85[JPT][hapmap]
rs2106311	0.84[JPT][hapmap]
rs2106312	0.84[JPT][hapmap]
rs2106313	0.85[JPT][hapmap]
rs2106314	0.85[JPT][hapmap]
rs2237743	0.83[JPT][hapmap]
rs2237745	0.85[JPT][hapmap]
rs2237747	0.85[JPT][hapmap]
rs2237750	0.85[JPT][hapmap]
rs2237751	0.85[JPT][hapmap]
rs2237752	0.84[JPT][hapmap]
rs2237761	0.92[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs2299465	0.85[JPT][hapmap]
rs2299466	0.81[JPT][hapmap]
rs2299467	0.85[JPT][hapmap]
rs2299468	0.85[JPT][hapmap]
rs2299470	0.84[JPT][hapmap]
rs2299475	0.85[JPT][hapmap]
rs2299476	0.84[JPT][hapmap]
rs2299477	0.85[JPT][hapmap]
rs2299478	0.85[JPT][hapmap]
rs2299479	0.85[JPT][hapmap]
rs2299480	0.83[JPT][hapmap]
rs2299484	0.85[JPT][hapmap]
rs2299486	0.85[JPT][hapmap]
rs2299487	0.85[JPT][hapmap]
rs2299488	0.85[JPT][hapmap]
rs2299491	0.84[JPT][hapmap]
rs2299493	0.92[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs2402816	0.84[JPT][hapmap]
rs2402820	0.92[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs2896372	0.84[JPT][hapmap]
rs3802001	0.85[JPT][hapmap]
rs3808156	0.85[JPT][hapmap]
rs3808157	0.85[JPT][hapmap]
rs3808161	0.85[JPT][hapmap]
rs3824014	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs3824018	0.85[JPT][hapmap]
rs4141361	0.89[JPT][hapmap]
rs4236623	0.85[JPT][hapmap]
rs4236624	0.84[JPT][hapmap]
rs4731320	0.92[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs6467092	0.84[JPT][hapmap]
rs6964806	0.84[JPT][hapmap]
rs6974396	0.84[JPT][hapmap]
rs6975231	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs728600	0.84[JPT][hapmap]
rs728601	0.85[JPT][hapmap]
rs728602	0.85[JPT][hapmap]
rs7455156	0.85[JPT][hapmap]
rs7784073	0.83[JPT][hapmap]
rs7790017	0.85[JPT][hapmap]
rs7792592	0.84[JPT][hapmap]
rs7792700	0.85[JPT][hapmap]
rs7792723	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7803165	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs7804379	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7808017	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs8180790	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9641799	0.85[JPT][hapmap]
rs9691497	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs975266	0.85[JPT][hapmap]
rs9942596	0.85[JPT][hapmap]
rs9942681	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032108	chr7:126278349-126362592	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv5939	chr7:126279355-126322778	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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