Variant report

Variant	rs6954396
Chromosome Location	chr7:145486424-145486425
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:145468884..145471463-chr7:145486033..145488649,2	K562	blood:
2	chr7:145480673..145485123-chr7:145486120..145492126,9	K562	blood:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs11489480	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12111803	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12112908	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56926166	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57727563	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58978891	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60764366	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61016174	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6951352	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6951353	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6954391	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6954685	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6954857	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6958710	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6959043	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6960168	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6960960	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6962759	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6971359	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6973173	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451004	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451006	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451009	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451019	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451020	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451022	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451026	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451034	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451035	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451038	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451040	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451041	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451043	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451047	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451048	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451056	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451059	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451061	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451063	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451067	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451073	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73451076	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73453052	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73453053	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73453057	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73453075	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73453076	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73456911	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73456916	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73456929	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73456936	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73456974	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73456984	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73456994	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73458806	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73458810	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73458865	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73458867	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73465701	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467313	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467316	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467317	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467318	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467322	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467324	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467325	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467326	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467331	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467335	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467337	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467361	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467362	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467365	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467367	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467370	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73467373	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7778402	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754040	chr7:145303352-145698352	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2755386	chr7:145303352-145698352	Genic enhancers Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv889383	chr7:145396141-145549570	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv831182	chr7:145399806-145556489	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1019118	chr7:145483353-145639795	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:145485800-145487000	Active TSS	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links