Variant report

Variant	rs6954846
Chromosome Location	chr7:137750696-137750697
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10245239	0.83[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];0.96[MEX][hapmap];0.83[TSI][hapmap];0.85[ASN][1000 genomes]
rs10246884	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs1025967	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10264658	0.81[AMR][1000 genomes]
rs10280394	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10280628	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10954602	0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs1424379	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1424380	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2120846	0.85[GIH][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs2166188	0.85[GIH][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs2859828	0.91[CHB][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap]
rs3757393	0.91[CHB][hapmap];0.84[GIH][hapmap];0.86[JPT][hapmap]
rs3807332	0.82[CHB][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap]
rs4732285	0.90[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6945659	0.91[CHB][hapmap];0.84[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6977075	0.82[GIH][hapmap];0.81[AMR][1000 genomes]
rs7784881	0.91[CHB][hapmap];0.84[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.80[MKK][hapmap];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7787591	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv831151	chr7:137711447-137865471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137749400-137752200	Enhancers	Fetal Intestine Small	intestine
2	chr7:137750000-137751000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:137750000-137751000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:137750000-137752400	Active TSS	Fetal Intestine Large	intestine
5	chr7:137750000-137756200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr7:137750000-137756400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr7:137750200-137756000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr7:137750600-137750800	Flanking Active TSS	HepG2	liver
9	chr7:137750600-137751200	Flanking Active TSS	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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