Variant report

Variant	rs6955455
Chromosome Location	chr7:104319110-104319111
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10233987	0.86[CHB][hapmap]
rs10279337	0.90[CHB][hapmap];0.80[JPT][hapmap]
rs10279375	0.87[CHB][hapmap]
rs10280745	0.81[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap]
rs11767604	0.86[CHB][hapmap]
rs11767619	0.87[CHB][hapmap]
rs4496900	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs4512324	0.83[CHB][hapmap]
rs6944469	0.87[CHB][hapmap]
rs6945225	0.83[CHB][hapmap]
rs9885990	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv967437	chr7:104312412-104323208	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv429790	chr7:104314049-104488049	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6955455	TRMT6	trans	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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