Variant report

Variant	rs6955686
Chromosome Location	chr7:48686600-48686601
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10268266	0.80[CEU][hapmap];0.86[JPT][hapmap]
rs11977294	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1358409	0.80[CEU][hapmap];0.82[JPT][hapmap]
rs1527842	0.80[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap]
rs1918583	0.88[CEU][hapmap];0.84[CHD][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3915483	0.84[CEU][hapmap];0.82[JPT][hapmap];0.86[MEX][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3923511	0.80[LWK][hapmap]
rs4917024	0.81[CEU][hapmap];0.82[CHD][hapmap];0.80[MEX][hapmap]
rs55652646	0.81[AMR][1000 genomes]
rs7790288	0.92[ASN][1000 genomes]
rs7811654	0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606894	chr7:48663637-48718598	ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6955686	CCM2	cis	parietal	SCAN
rs6955686	FIGNL1	cis	cerebellum	SCAN
rs6955686	ADCY1	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48672600-48688800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:48683400-48689000	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr7:48685600-48687200	Weak transcription	Fetal Heart	heart
4	chr7:48686200-48687200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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