Variant report

Variant	rs6957779
Chromosome Location	chr7:125023265-125023266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10232586	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10240697	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10256418	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10269744	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10808222	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10808223	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10954074	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11765360	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11765430	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12333688	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13229120	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13229231	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13229240	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1427574	0.93[ASN][1000 genomes]
rs1559968	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1559969	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1593756	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17333964	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1834822	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1896470	0.83[EUR][1000 genomes]
rs1896471	0.93[ASN][1000 genomes]
rs2042820	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4400313	1.00[CEU][hapmap]
rs4728023	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4731246	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62479869	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62482066	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62482069	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6467008	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6970648	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7456179	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7777536	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7777653	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9649009	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9649477	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9649478	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9791477	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422188	chr7:124782873-125254203	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv2761087	chr7:124823624-125429662	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv889140	chr7:124921028-125042024	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv464709	chr7:124921028-125068580	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv608345	chr7:124921028-125068580	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv889141	chr7:124935779-125072969	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv889142	chr7:124958806-125068580	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1028369	chr7:124967804-125508233	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv948720	chr7:124970772-125783434	Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv889143	chr7:124977736-125042024	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv889144	chr7:124977736-125068580	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv889145	chr7:124977736-125231999	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv889146	chr7:124996787-125083020	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6957779	TAS2R16	cis	parietal	SCAN
rs6957779	LOC407835	cis	cerebellum	SCAN
rs6957779	MEST	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:125021400-125023800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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