Variant report

Variant	rs6958132
Chromosome Location	chr7:105144946-105144947
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:105143576..105146396-chr7:105147042..105149947,3	K562	blood:
2	chr7:105143706..105147161-chr7:105171378..105174621,4	K562	blood:
3	chr7:105143860..105146568-chr7:105160476..105162753,4	K562	blood:
4	chr7:105143860..105147794-chr7:105158802..105162576,5	K562	blood:
5	chr7:105143804..105146396-chr7:105147042..105149947,2	K562	blood:

Variant related genes	Relation type
ENSG00000135249	Chromatin interaction
ENSG00000091127	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12540022	0.84[CHB][hapmap]
rs1728646	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs1728649	0.84[JPT][hapmap]
rs1918875	0.84[JPT][hapmap]
rs3735368	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3735369	0.83[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4373450	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55650695	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55764366	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs56127755	0.91[ASN][1000 genomes]
rs60973987	0.94[ASN][1000 genomes]
rs6953327	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6957263	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6958252	0.94[YRI][hapmap]
rs6960696	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6964788	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6965760	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6971072	0.81[CHB][hapmap];0.95[EUR][1000 genomes]
rs711427	0.82[JPT][hapmap]
rs711433	0.82[JPT][hapmap]
rs73190117	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73190120	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7798871	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs818470	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs818471	1.00[CEU][hapmap];0.92[CHB][hapmap];0.84[JPT][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34588	chr7:104737612-105153242	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv2757233	chr7:104758250-105208492	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv2759549	chr7:104758250-105208492	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv8196	chr7:104763559-105155978	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv34580	chr7:104763580-105153242	Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv1028228	chr7:104807207-105182998	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv932138	chr7:104826194-105152816	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv1015688	chr7:104849770-105182998	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
9	nsv1023767	chr7:104931143-105190662	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
10	nsv539049	chr7:104931143-105190662	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
11	nsv1022065	chr7:104997315-105190662	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
12	nsv888929	chr7:105012975-105163091	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
13	nsv888930	chr7:105012975-105170476	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
14	nsv888931	chr7:105012975-105173974	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
15	nsv888932	chr7:105012975-105179756	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
16	nsv888933	chr7:105012975-105193051	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
17	nsv1018975	chr7:105018374-105153618	Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
18	nsv539050	chr7:105018374-105153618	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
19	nsv1023564	chr7:105018484-105182998	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
20	nsv464668	chr7:105088693-105208492	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
21	nsv608069	chr7:105088693-105208492	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
22	nsv888935	chr7:105110990-105193051	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
23	nsv888936	chr7:105119308-105193051	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
24	esv1793037	chr7:105137305-105167132	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105080000-105161200	Weak transcription	Pancreas	Pancrea
2	chr7:105088200-105152800	Weak transcription	Gastric	stomach
3	chr7:105089600-105145200	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr7:105089600-105145800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr7:105093600-105153000	Weak transcription	Small Intestine	intestine
6	chr7:105096400-105145600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr7:105098200-105151200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr7:105099800-105153000	Weak transcription	Psoas Muscle	Psoas
9	chr7:105123200-105151200	Weak transcription	Brain Germinal Matrix	brain
10	chr7:105124400-105161800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr7:105127200-105148400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr7:105128600-105148400	Weak transcription	Primary B cells from peripheral blood	blood
13	chr7:105128600-105161200	Weak transcription	Brain Hippocampus Middle	brain
14	chr7:105128600-105161600	Weak transcription	Brain Substantia Nigra	brain
15	chr7:105128800-105148200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr7:105128800-105161200	Weak transcription	Brain Angular Gyrus	brain
17	chr7:105129200-105153400	Weak transcription	Fetal Lung	lung
18	chr7:105129600-105149400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr7:105131200-105153000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr7:105134000-105149200	Strong transcription	K562	blood
21	chr7:105134400-105149200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr7:105134400-105161200	Weak transcription	Brain Anterior Caudate	brain
23	chr7:105134800-105149400	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr7:105134800-105161600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr7:105135000-105147800	Weak transcription	Stomach Mucosa	stomach
26	chr7:105135200-105154000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:105137000-105149000	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr7:105137000-105149200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr7:105137000-105149200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr7:105137400-105149200	Strong transcription	H1 Cell Line	embryonic stem cell
31	chr7:105137400-105149400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr7:105137800-105145000	Weak transcription	Fetal Kidney	kidney
33	chr7:105137800-105149000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr7:105137800-105161200	Weak transcription	NHDF-Ad	bronchial
35	chr7:105137800-105161200	Weak transcription	NHLF	lung
36	chr7:105138000-105147200	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr7:105138400-105146200	Strong transcription	Skeletal Muscle Female	skeletal muscle
38	chr7:105138800-105146200	Strong transcription	Fetal Muscle Leg	muscle
39	chr7:105138800-105146800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr7:105138800-105149000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr7:105138800-105149600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr7:105139000-105149000	Strong transcription	A549	lung
43	chr7:105139000-105150800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr7:105139200-105149000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr7:105139200-105149200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr7:105139400-105146400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr7:105139400-105152800	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr7:105139600-105146600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr7:105139600-105147200	Strong transcription	NHEK	skin
50	chr7:105139600-105149000	Strong transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links