Variant report

Variant	rs6958203
Chromosome Location	chr7:105445772-105445773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:105443038..105446248-chr7:105449181..105451715,3	K562	blood:
2	chr7:105438596..105441130-chr7:105444567..105447307,2	MCF-7	breast:
3	chr7:105441499..105444836-chr7:105445726..105447948,4	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs510382	1.00[AMR][1000 genomes]
rs533332	1.00[AMR][1000 genomes]
rs6950432	1.00[AMR][1000 genomes]
rs6964480	1.00[AMR][1000 genomes]
rs6977858	1.00[AMR][1000 genomes]
rs7786261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7793664	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027213	chr7:105438610-106022869	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105418400-105446400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:105422000-105452000	Weak transcription	Colonic Mucosa	Colon
3	chr7:105429200-105446000	Weak transcription	Brain Anterior Caudate	brain
4	chr7:105430000-105447000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr7:105430200-105479200	Weak transcription	Aorta	Aorta
6	chr7:105434200-105446000	Weak transcription	Brain Angular Gyrus	brain
7	chr7:105435800-105446600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr7:105435800-105447200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr7:105436200-105446600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr7:105436800-105447200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr7:105437600-105445800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr7:105438000-105446400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr7:105439000-105446800	Weak transcription	Spleen	Spleen
14	chr7:105439800-105447600	Enhancers	Colon Smooth Muscle	Colon
15	chr7:105440000-105446000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr7:105440200-105445800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr7:105440200-105446000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr7:105440200-105446000	Weak transcription	Lung	lung
19	chr7:105440400-105446200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr7:105441000-105446000	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr7:105441000-105447000	Weak transcription	Right Ventricle	heart
22	chr7:105441000-105448200	Weak transcription	Left Ventricle	heart
23	chr7:105441200-105446400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr7:105441200-105446400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr7:105441200-105457200	Weak transcription	Fetal Lung	lung
26	chr7:105441400-105446000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr7:105441400-105446000	Weak transcription	NHDF-Ad	bronchial
28	chr7:105441400-105446400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr7:105441400-105446600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr7:105441400-105446800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr7:105441400-105446800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr7:105441400-105447000	Weak transcription	Primary T cells from cord blood	blood
33	chr7:105441400-105449800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr7:105441600-105446000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr7:105441600-105446200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr7:105441600-105446600	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr7:105441600-105446800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr7:105441600-105447000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr7:105441800-105446400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr7:105441800-105446600	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr7:105442200-105446400	Enhancers	Liver	Liver
42	chr7:105442800-105447800	Enhancers	Stomach Smooth Muscle	stomach
43	chr7:105443200-105445800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr7:105443400-105445800	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr7:105443400-105445800	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr7:105443400-105446400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr7:105443600-105445800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr7:105443600-105446000	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr7:105443600-105446000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr7:105443800-105445800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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