Variant report

Variant	rs6959400
Chromosome Location	chr7:104018440-104018441
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10228106	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10249235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10254627	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10487203	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10953428	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10953432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1123760	0.95[CEU][hapmap]
rs12705208	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs1468143	1.00[CEU][hapmap]
rs1468144	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17390895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1989823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2040584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2188482	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2188493	0.88[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs2188494	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2214086	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4236567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4727596	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs4727599	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs4730001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4730002	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4730006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4730007	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6465985	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6946555	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6951873	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6952170	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7778325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7798273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608067	chr7:103944237-104029408	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links