Variant report

Variant	rs6959750
Chromosome Location	chr7:104601978-104601979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:104592416..104594450-chr7:104601446..104605080,3	K562	blood:
2	chr7:104597662..104599339-chr7:104600006..104602657,2	K562	blood:
3	chr7:104601811..104603786-chr7:104606553..104608105,2	MCF-7	breast:
4	chr7:104591329..104593966-chr7:104601076..104603723,3	K562	blood:
5	chr7:104601027..104603831-chr7:104652216..104655024,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000005483	Chromatin interaction
ENSG00000228393	Chromatin interaction
ENSG00000239569	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12112458	1.00[AMR][1000 genomes]
rs28490962	1.00[AMR][1000 genomes]
rs9969240	1.00[AMR][1000 genomes]
rs9969263	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029283	chr7:104571741-104729168	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	132 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104584600-104619000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:104587200-104623600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr7:104591600-104604600	Weak transcription	Fetal Kidney	kidney
4	chr7:104595600-104605600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr7:104597200-104608200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr7:104597800-104606200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr7:104598000-104602800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr7:104598000-104603000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:104598000-104603400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr7:104598000-104619800	Weak transcription	Primary T cells from cord blood	blood
11	chr7:104598000-104621600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr7:104598200-104611600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr7:104598200-104620800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr7:104598200-104621400	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr7:104598200-104623000	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr7:104598400-104607600	Weak transcription	HSMM	muscle
17	chr7:104599000-104617200	Weak transcription	Gastric	stomach
18	chr7:104599200-104603800	Weak transcription	HepG2	liver
19	chr7:104599400-104602600	Weak transcription	Colon Smooth Muscle	Colon
20	chr7:104599400-104603800	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr7:104599400-104604200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr7:104599600-104603200	Weak transcription	Fetal Stomach	stomach
23	chr7:104600600-104603600	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr7:104601000-104602000	Enhancers	Fetal Intestine Large	intestine
25	chr7:104601000-104602800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr7:104601000-104604000	Enhancers	GM12878-XiMat	blood
27	chr7:104601000-104604600	Enhancers	Primary hematopoietic stem cells	blood
28	chr7:104601000-104604600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr7:104601000-104604600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr7:104601000-104605400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr7:104601000-104605400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr7:104601200-104602000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr7:104601200-104602000	Enhancers	Muscle Satellite Cultured Cells	--
34	chr7:104601200-104602000	Enhancers	Brain Hippocampus Middle	brain
35	chr7:104601200-104602000	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr7:104601200-104602000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr7:104601200-104602000	Enhancers	Fetal Intestine Small	intestine
38	chr7:104601200-104602000	Enhancers	Placenta	Placenta
39	chr7:104601200-104602200	Enhancers	Stomach Mucosa	stomach
40	chr7:104601200-104602200	Enhancers	Osteobl	bone
41	chr7:104601200-104602400	Enhancers	Primary B cells from peripheral blood	blood
42	chr7:104601200-104602800	Enhancers	NHEK	skin
43	chr7:104601200-104603000	Enhancers	Brain Substantia Nigra	brain
44	chr7:104601200-104603200	Enhancers	Esophagus	oesophagus
45	chr7:104601200-104603200	Enhancers	Spleen	Spleen
46	chr7:104601200-104603400	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr7:104601200-104604400	Enhancers	Fetal Thymus	thymus
48	chr7:104601200-104604400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
49	chr7:104601200-104604600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr7:104601200-104604800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links