Variant report

Variant	rs6960341
Chromosome Location	chr7:47886240-47886241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:47884198..47887290-chr7:48007408..48010423,4	MCF-7	breast:
2	chr7:47885633..47887490-chr7:47888124..47890884,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6956120	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7783849	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv888003	chr7:47694270-47907214	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv869585	chr7:47765428-48151324	Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv830991	chr7:47854530-48025996	Weak transcription Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv532120	chr7:47882757-48195869	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:47855800-47902400	Weak transcription	Adipose Nuclei	Adipose
2	chr7:47884400-47887200	Enhancers	HUVEC	blood vessel
3	chr7:47884800-47886400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:47884800-47887000	Enhancers	HSMM	muscle
5	chr7:47885200-47886400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr7:47885400-47886400	Enhancers	HSMMtube	muscle
7	chr7:47885400-47886600	Enhancers	NHEK	skin
8	chr7:47885400-47886800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr7:47885400-47887000	Enhancers	NHLF	lung
10	chr7:47885400-47887200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr7:47885600-47886400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:47885600-47886400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:47885600-47886800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:47885800-47886400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:47885800-47886400	Enhancers	Left Ventricle	heart
16	chr7:47885800-47886400	Flanking Active TSS	A549	lung
17	chr7:47885800-47886400	Enhancers	HMEC	breast
18	chr7:47885800-47887000	Enhancers	NH-A	brain
19	chr7:47886000-47886400	Enhancers	Esophagus	oesophagus
20	chr7:47886000-47886400	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr7:47886000-47886400	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr7:47886000-47886400	Flanking Active TSS	Hela-S3	cervix
23	chr7:47886000-47886800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr7:47886000-47886800	Enhancers	Aorta	Aorta
25	chr7:47886000-47887000	Enhancers	Lung	lung
26	chr7:47886200-47886400	Flanking Active TSS	Fetal Heart	heart
27	chr7:47886200-47886400	Weak transcription	Gastric	stomach
28	chr7:47886200-47886800	Weak transcription	Right Atrium	heart
29	chr7:47886200-47886800	Enhancers	Right Ventricle	heart
30	chr7:47886200-47911000	Weak transcription	Psoas Muscle	Psoas

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