Variant report

Variant	rs6961407
Chromosome Location	chr7:147663430-147663431
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10263964	0.90[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11767010	1.00[CEU][hapmap]
rs11771941	0.96[CEU][hapmap]
rs12532080	0.84[YRI][hapmap]
rs17170769	0.90[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17432092	0.96[CEU][hapmap]
rs2189883	0.85[CEU][hapmap]
rs2204924	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap]
rs2204926	0.96[CEU][hapmap]
rs2214682	0.86[CEU][hapmap]
rs2246970	0.95[CHB][hapmap];0.91[JPT][hapmap];0.93[YRI][hapmap]
rs2249958	0.81[YRI][hapmap]
rs2250061	0.81[YRI][hapmap]
rs2250528	0.90[YRI][hapmap]
rs2373276	0.81[YRI][hapmap]
rs2707575	0.96[CEU][hapmap]
rs2707576	0.96[CEU][hapmap]
rs2707580	0.96[CEU][hapmap]
rs2707587	0.83[YRI][hapmap]
rs2707588	0.83[YRI][hapmap]
rs2708248	0.96[CEU][hapmap]
rs2708249	0.84[YRI][hapmap]
rs2708261	0.92[CEU][hapmap]
rs2708277	0.81[YRI][hapmap]
rs2708278	0.95[CHB][hapmap];0.87[JPT][hapmap];0.97[YRI][hapmap]
rs2708284	0.93[CEU][hapmap]
rs2708285	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2710075	0.85[CEU][hapmap]
rs2710082	0.96[CEU][hapmap]
rs2859687	0.85[CEU][hapmap]
rs28716147	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62471122	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8180798	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv889399	chr7:147643923-147712471	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv889400	chr7:147650411-147712471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links