Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39384525..39386962-chr7:39393225..39395151,2	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10248165	0.81[CHB][hapmap];0.92[JPT][hapmap]
rs10251013	0.98[ASN][1000 genomes]
rs10269183	0.82[CHB][hapmap];0.93[JPT][hapmap]
rs10951603	0.85[JPT][hapmap]
rs11971775	0.84[ASN][1000 genomes]
rs12701728	0.84[JPT][hapmap]
rs12701729	0.92[JPT][hapmap]
rs1558159	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1990243	0.87[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2190887	0.97[ASN][1000 genomes]
rs2237411	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2299135	0.87[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[ASN][1000 genomes]
rs2299137	0.96[ASN][1000 genomes]
rs2299140	0.98[ASN][1000 genomes]
rs2299141	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2329388	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2329389	0.98[ASN][1000 genomes]
rs2329390	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2329391	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2876835	0.82[ASN][1000 genomes]
rs3800854	0.98[ASN][1000 genomes]
rs60586729	0.82[ASN][1000 genomes]
rs740509	0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap];0.96[ASN][1000 genomes]
rs887013	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv887969	chr7:39265429-39391875	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39383400-39391800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr7:39383600-39391200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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