Variant report

Variant	rs6963987
Chromosome Location	chr7:104514314-104514315
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs35894637	0.82[EUR][1000 genomes]
rs57624778	0.85[EUR][1000 genomes]
rs6963979	0.83[EUR][1000 genomes]
rs6968540	0.80[EUR][1000 genomes]
rs73184012	0.81[EUR][1000 genomes]
rs73184014	0.91[EUR][1000 genomes]
rs73184016	0.90[EUR][1000 genomes]
rs73184018	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104481600-104514400	Weak transcription	Fetal Kidney	kidney
2	chr7:104504400-104517000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr7:104509600-104516200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:104509800-104524400	Weak transcription	Pancreas	Pancrea
5	chr7:104511600-104519600	Weak transcription	Fetal Intestine Large	intestine
6	chr7:104512000-104524000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr7:104512400-104516000	Strong transcription	Fetal Intestine Small	intestine
8	chr7:104513800-104514400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr7:104514000-104514400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr7:104514200-104514400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:104514200-104514400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:104514200-104514400	Active TSS	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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