Variant report

Variant	rs6964480
Chromosome Location	chr7:105470211-105470212
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:105469427..105472941-chr7:105514673..105518034,4	MCF-7	breast:
2	chr7:105470129..105472971-chr7:105479942..105482901,2	MCF-7	breast:
3	chr7:105465600..105467491-chr7:105469764..105471785,2	K562	blood:

Variant related genes	Relation type
ENSG00000128536	Chromatin interaction
ENSG00000146776	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs510382	1.00[AMR][1000 genomes]
rs533332	1.00[AMR][1000 genomes]
rs6466076	1.00[YRI][hapmap]
rs6950432	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6958203	1.00[AMR][1000 genomes]
rs6977858	1.00[AMR][1000 genomes]
rs7786261	1.00[AMR][1000 genomes]
rs7793664	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027213	chr7:105438610-106022869	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105430200-105479200	Weak transcription	Aorta	Aorta
2	chr7:105446400-105471200	Weak transcription	Lung	lung
3	chr7:105446800-105471200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:105447800-105470600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:105448800-105470400	Weak transcription	Fetal Muscle Leg	muscle
6	chr7:105449000-105479200	Weak transcription	Esophagus	oesophagus
7	chr7:105452400-105471200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr7:105452600-105470800	Weak transcription	Small Intestine	intestine
9	chr7:105452600-105471200	Weak transcription	Right Ventricle	heart
10	chr7:105452800-105470400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr7:105457200-105478000	Weak transcription	Brain Anterior Caudate	brain
12	chr7:105459200-105470600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr7:105459200-105473200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr7:105460200-105471000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:105461000-105471200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr7:105461600-105473200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr7:105462600-105471400	Weak transcription	Primary T cells from cord blood	blood
18	chr7:105462800-105470400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr7:105462800-105473000	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr7:105464200-105473200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr7:105464400-105471000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr7:105465400-105506600	Weak transcription	Fetal Intestine Large	intestine
23	chr7:105465800-105471200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr7:105465800-105473200	Enhancers	NHDF-Ad	bronchial
25	chr7:105466200-105473600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr7:105466400-105472200	Enhancers	HepG2	liver
27	chr7:105467000-105470400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr7:105467000-105470400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr7:105467000-105471000	Weak transcription	Psoas Muscle	Psoas
30	chr7:105467200-105471000	Weak transcription	Adipose Nuclei	Adipose
31	chr7:105468200-105478200	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr7:105468400-105473600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr7:105468400-105478800	Weak transcription	Fetal Intestine Small	intestine
34	chr7:105468600-105471800	Enhancers	Pancreas	Pancrea
35	chr7:105468600-105473000	Enhancers	Fetal Lung	lung
36	chr7:105468800-105470400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr7:105469000-105470800	Weak transcription	Left Ventricle	heart
38	chr7:105469000-105479200	Weak transcription	Right Atrium	heart
39	chr7:105469400-105471800	Enhancers	Stomach Mucosa	stomach
40	chr7:105469600-105472600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr7:105469800-105470400	Enhancers	Muscle Satellite Cultured Cells	--
42	chr7:105469800-105470400	Enhancers	Hela-S3	cervix
43	chr7:105469800-105471400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr7:105469800-105472400	Enhancers	Osteobl	bone
45	chr7:105469800-105472600	Enhancers	Fetal Stomach	stomach
46	chr7:105469800-105472600	Enhancers	Rectal Smooth Muscle	rectum
47	chr7:105469800-105473800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr7:105470000-105470600	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr7:105470000-105470800	Flanking Active TSS	NHLF	lung
50	chr7:105470000-105471200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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