Variant report
| Variant | rs6964959 |
|---|---|
| Chromosome Location | chr7:147380877-147380878 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:147373066..147375755-chr7:147377367..147381664,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs1404736 | 0.88[AMR][1000 genomes] |
| rs1404738 | 0.88[AMR][1000 genomes] |
| rs17170638 | 1.00[CHB][hapmap];0.88[AMR][1000 genomes] |
| rs1830043 | 0.88[AMR][1000 genomes] |
| rs2190915 | 1.00[CHB][hapmap];0.98[AMR][1000 genomes] |
| rs2215154 | 0.98[AMR][1000 genomes] |
| rs2373173 | 0.96[AMR][1000 genomes] |
| rs2373174 | 0.96[AMR][1000 genomes] |
| rs2373175 | 1.00[CHB][hapmap];0.96[AMR][1000 genomes] |
| rs2373176 | 1.00[CHB][hapmap];0.96[AMR][1000 genomes] |
| rs2888514 | 0.96[AMR][1000 genomes] |
| rs2888515 | 1.00[CHB][hapmap];0.96[AMR][1000 genomes] |
| rs4310123 | 1.00[CHB][hapmap];0.98[AMR][1000 genomes] |
| rs4379380 | 1.00[CHB][hapmap];0.94[AMR][1000 genomes] |
| rs4383899 | 1.00[CHB][hapmap] |
| rs4383900 | 1.00[CHB][hapmap];0.94[AMR][1000 genomes] |
| rs4427087 | 0.98[AMR][1000 genomes] |
| rs4436047 | 1.00[CHB][hapmap];0.94[AMR][1000 genomes] |
| rs4486105 | 0.98[AMR][1000 genomes] |
| rs4487669 | 0.98[AMR][1000 genomes] |
| rs4520083 | 1.00[CHB][hapmap];0.98[AMR][1000 genomes] |
| rs6964327 | 1.00[CHB][hapmap] |
| rs6970360 | 1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs731565 | 1.00[CHB][hapmap] |
| rs7457657 | 1.00[CHB][hapmap];0.96[AMR][1000 genomes] |
| rs758259 | 1.00[CHB][hapmap];0.96[AMR][1000 genomes] |
| rs7779787 | 1.00[CHB][hapmap] |
| rs7786677 | 1.00[CHB][hapmap] |
| rs7799323 | 1.00[CHB][hapmap] |
| rs7803219 | 1.00[CHB][hapmap];0.88[AMR][1000 genomes] |
| rs851726 | 1.00[CHB][hapmap] |
| rs851727 | 1.00[CHB][hapmap] |
| rs851734 | 1.00[CHB][hapmap];0.82[AMR][1000 genomes] |
| rs971440 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931005 | chr7:146730472-147381257 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | esv3400108 | chr7:147380762-147380965 | Inactive region | Chromatin interactive region | n/a | n/a | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
