Variant report

Variant	rs6966054
Chromosome Location	chr7:124685228-124685229
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10256073	0.85[CHB][hapmap]
rs10266152	0.85[CHB][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10281773	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1031952	0.85[CHB][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10500102	0.85[ASN][1000 genomes]
rs10954061	0.85[CHB][hapmap]
rs10954064	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11761435	0.85[CHB][hapmap]
rs11771004	0.82[CEU][hapmap];0.83[CHB][hapmap]
rs11978268	0.81[EUR][1000 genomes]
rs13240050	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1404897	0.85[CHB][hapmap]
rs1471570	0.85[CHB][hapmap]
rs1481334	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1568882	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17147723	0.85[CHB][hapmap]
rs17147889	0.85[CHB][hapmap];0.90[ASN][1000 genomes]
rs2127968	0.82[EUR][1000 genomes]
rs2127969	0.82[EUR][1000 genomes]
rs2127970	0.82[EUR][1000 genomes]
rs2402761	0.81[EUR][1000 genomes]
rs28820412	0.82[EUR][1000 genomes]
rs2929321	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2929322	0.85[CHB][hapmap];0.90[ASN][1000 genomes]
rs2968868	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs598102	0.87[ASN][1000 genomes]
rs627823	0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs650653	0.87[ASN][1000 genomes]
rs663056	0.87[ASN][1000 genomes]
rs669273	0.87[ASN][1000 genomes]
rs670910	0.85[ASN][1000 genomes]
rs671359	0.85[ASN][1000 genomes]
rs6946962	0.81[CHB][hapmap]
rs6965957	0.81[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap]
rs719974	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs727521	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7786989	0.82[EUR][1000 genomes]
rs7787570	0.81[EUR][1000 genomes]
rs967297	0.85[CHB][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv889139	chr7:124600505-124767295	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv3394090	chr7:124602150-124900799	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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