Variant report
| Variant | rs6966854 |
|---|---|
| Chromosome Location | chr7:19753063-19753064 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:10)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:10 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CTCF | chr7:19753000-19753150 | NHDF-neo | bronchial: | n/a | n/a |
| 2 | CTCF | chr7:19752940-19753090 | HCM | heart: | n/a | n/a |
| 3 | CTCF | chr7:19752980-19753130 | NHLF | lung: | n/a | n/a |
| 4 | CTCF | chr7:19753020-19753170 | AoAF | blood vessel: | n/a | n/a |
| 5 | CTCF | chr7:19753000-19753150 | GM06990 | blood: | n/a | n/a |
| 6 | CTCF | chr7:19752840-19754066 | SK-N-SH | brain: | n/a | chr7:19753640-19753653 chr7:19753482-19753498 chr7:19753481-19753499 chr7:19753483-19753504 |
| 7 | CTCF | chr7:19753040-19753190 | HPF | lung: | n/a | n/a |
| 8 | CTCF | chr7:19752960-19753110 | HCM | heart: | n/a | n/a |
| 9 | RAD21 | chr7:19753041-19753849 | SK-N-SH | brain: | n/a | chr7:19753482-19753501 |
| 10 | CTCF | chr7:19752910-19753951 | A549 | lung: | n/a | chr7:19753640-19753653 chr7:19753482-19753498 chr7:19753481-19753499 chr7:19753483-19753504 |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| TWISTNB | TF binding region |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs2191937 | 1.00[AFR][1000 genomes] |
| rs55636047 | 1.00[AFR][1000 genomes] |
| rs56047253 | 1.00[AFR][1000 genomes] |
| rs56051858 | 1.00[AFR][1000 genomes] |
| rs56089097 | 1.00[AFR][1000 genomes] |
| rs56104650 | 1.00[AFR][1000 genomes] |
| rs62454500 | 1.00[AFR][1000 genomes] |
| rs62454501 | 1.00[AFR][1000 genomes] |
| rs73072937 | 1.00[AFR][1000 genomes] |
| rs73084970 | 1.00[AFR][1000 genomes] |
| rs73086653 | 1.00[AFR][1000 genomes] |
| rs73086657 | 1.00[AFR][1000 genomes] |
| rs73086681 | 1.00[AFR][1000 genomes] |
| rs73086685 | 1.00[AFR][1000 genomes] |
| rs73086687 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018601 | chr7:19272360-20008881 | Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 24 gene(s) | inside rSNPs | diseases |
| 2 | nsv1033223 | chr7:19682192-20461375 | Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 36 gene(s) | inside rSNPs | diseases |
| 3 | nsv538795 | chr7:19682192-20461375 | Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 36 gene(s) | inside rSNPs | diseases |
| 4 | nsv524807 | chr7:19714156-19803925 | Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionmiRNA | 11 gene(s) | inside rSNPs | diseases |
| 5 | nsv830918 | chr7:19747674-19914527 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:19749600-19753200 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
