Variant report

Variant	rs6968540
Chromosome Location	chr7:104518405-104518406
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10216243	0.86[ASN][1000 genomes]
rs10226456	0.92[ASN][1000 genomes]
rs10226802	0.84[ASN][1000 genomes]
rs10227564	0.84[ASN][1000 genomes]
rs10235696	0.99[ASN][1000 genomes]
rs10236552	0.90[ASN][1000 genomes]
rs10237433	0.80[ASN][1000 genomes]
rs10238498	0.92[ASN][1000 genomes]
rs10243336	0.84[ASN][1000 genomes]
rs10243529	0.84[ASN][1000 genomes]
rs10247246	0.84[ASN][1000 genomes]
rs10247944	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10250365	0.84[ASN][1000 genomes]
rs10253341	0.85[ASN][1000 genomes]
rs10257360	0.92[ASN][1000 genomes]
rs10259925	0.84[ASN][1000 genomes]
rs10262655	0.84[ASN][1000 genomes]
rs10264318	0.84[ASN][1000 genomes]
rs10266362	0.82[ASN][1000 genomes]
rs10272668	0.84[ASN][1000 genomes]
rs10273609	0.93[ASN][1000 genomes]
rs10274240	0.93[ASN][1000 genomes]
rs10280365	0.92[ASN][1000 genomes]
rs10281485	0.90[ASN][1000 genomes]
rs10953454	0.84[ASN][1000 genomes]
rs10953455	0.84[ASN][1000 genomes]
rs12535201	0.84[ASN][1000 genomes]
rs12537945	0.80[ASN][1000 genomes]
rs12670275	0.92[ASN][1000 genomes]
rs12672211	0.80[ASN][1000 genomes]
rs12705281	0.84[ASN][1000 genomes]
rs12705282	0.83[ASN][1000 genomes]
rs12705285	0.84[ASN][1000 genomes]
rs13228977	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1468813	0.83[ASN][1000 genomes]
rs17777379	0.82[ASN][1000 genomes]
rs17777439	0.84[ASN][1000 genomes]
rs2285533	0.90[ASN][1000 genomes]
rs28478615	0.80[ASN][1000 genomes]
rs28546781	0.97[ASN][1000 genomes]
rs28587189	0.92[ASN][1000 genomes]
rs34083033	0.99[ASN][1000 genomes]
rs34171467	0.88[ASN][1000 genomes]
rs34508498	0.84[ASN][1000 genomes]
rs35324592	0.84[ASN][1000 genomes]
rs35337480	0.83[ASN][1000 genomes]
rs35756879	0.90[ASN][1000 genomes]
rs35894637	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35988800	0.92[ASN][1000 genomes]
rs4351347	0.84[ASN][1000 genomes]
rs57624778	0.85[EUR][1000 genomes]
rs6949139	0.80[ASN][1000 genomes]
rs6963979	0.83[ASN][1000 genomes]
rs6963987	0.80[EUR][1000 genomes]
rs71562620	0.84[ASN][1000 genomes]
rs71562621	0.82[ASN][1000 genomes]
rs73184014	0.89[EUR][1000 genomes]
rs73184016	0.89[EUR][1000 genomes]
rs73184018	0.89[EUR][1000 genomes]
rs7779117	0.80[ASN][1000 genomes]
rs7781864	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104509800-104524400	Weak transcription	Pancreas	Pancrea
2	chr7:104511600-104519600	Weak transcription	Fetal Intestine Large	intestine
3	chr7:104512000-104524000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:104516000-104519600	Weak transcription	Fetal Intestine Small	intestine

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