Variant report

Variant	rs6969463
Chromosome Location	chr7:101766016-101766017
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101765651..101767263-chr7:101768862..101771424,2	K562	blood:
2	chr7:101764947..101767456-chr7:101770353..101773289,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10263474	0.86[AMR][1000 genomes]
rs104933	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11972888	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11973970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11977667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11982785	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16869529	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17135027	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17135076	0.81[EUR][1000 genomes]
rs1734614	0.81[EUR][1000 genomes]
rs2051962	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2529097	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34746794	0.81[EUR][1000 genomes]
rs364466	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs380967	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs388592	0.81[EUR][1000 genomes]
rs389224	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs392286	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs397479	0.81[EUR][1000 genomes]
rs411030	0.81[EUR][1000 genomes]
rs424941	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs436090	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs442030	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs446513	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59822540	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408028	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73408058	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408093	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408094	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73412036	0.86[AMR][1000 genomes]
rs73412046	0.86[AMR][1000 genomes]
rs965863	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101750200-101771000	Weak transcription	Fetal Heart	heart
2	chr7:101755200-101787000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:101755400-101773200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:101759400-101770200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr7:101759800-101768400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:101760200-101769600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr7:101760200-101796000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr7:101760400-101768000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr7:101760400-101768400	Weak transcription	Aorta	Aorta
10	chr7:101760400-101788600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr7:101760400-101789400	Weak transcription	Right Ventricle	heart
12	chr7:101760400-101795800	Weak transcription	Left Ventricle	heart
13	chr7:101760800-101766400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr7:101761000-101795600	Weak transcription	Colon Smooth Muscle	Colon
15	chr7:101761200-101769200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr7:101761400-101768400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr7:101761400-101768600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr7:101762800-101767400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr7:101762800-101767400	Weak transcription	Gastric	stomach
20	chr7:101763000-101768600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr7:101763400-101772200	Weak transcription	Fetal Brain Female	brain
22	chr7:101763600-101773200	Weak transcription	Fetal Kidney	kidney
23	chr7:101763600-101790400	Weak transcription	Brain Anterior Caudate	brain
24	chr7:101763800-101767200	Weak transcription	Primary T cells from cord blood	blood
25	chr7:101763800-101769800	Weak transcription	Brain Substantia Nigra	brain
26	chr7:101764000-101766400	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr7:101764200-101767200	Weak transcription	Thymus	Thymus
28	chr7:101764600-101766200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr7:101764600-101766200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr7:101764600-101766200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr7:101764600-101766200	Enhancers	Colonic Mucosa	Colon
32	chr7:101764600-101766200	Enhancers	Placenta	Placenta
33	chr7:101764600-101766400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr7:101764600-101766400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr7:101764800-101766200	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr7:101764800-101766200	Enhancers	Primary hematopoietic stem cells	blood
37	chr7:101764800-101766200	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr7:101764800-101766200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr7:101764800-101766200	Enhancers	Brain Germinal Matrix	brain
40	chr7:101764800-101766200	Genic enhancers	Fetal Muscle Leg	muscle
41	chr7:101764800-101766200	Flanking Active TSS	Hela-S3	cervix
42	chr7:101764800-101766200	Enhancers	HSMM	muscle
43	chr7:101764800-101766200	Enhancers	Osteobl	bone
44	chr7:101765000-101766200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr7:101765000-101766200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr7:101765000-101766200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr7:101765000-101766200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr7:101765000-101766200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr7:101765000-101766200	Genic enhancers	Fetal Intestine Small	intestine
50	chr7:101765000-101766200	Enhancers	Placenta Amnion	Placenta Amnion

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