Variant report

Variant	rs6973057
Chromosome Location	chr7:138119674-138119675
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:138118451..138121138-chr7:138143933..138146322,3	K562	blood:
2	chr7:138114924..138116896-chr7:138118468..138121026,2	K562	blood:
3	chr7:138114924..138116891-chr7:138118202..138121026,2	K562	blood:

Variant related genes	Relation type
ENSG00000122779	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10225876	0.82[AMR][1000 genomes]
rs10246196	0.91[JPT][hapmap]
rs10246563	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10250362	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12533792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12668679	0.87[CEU][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17169596	0.80[CEU][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17169597	0.87[CEU][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2029814	0.81[JPT][hapmap]
rs2029815	0.81[JPT][hapmap]
rs2353346	0.82[AMR][1000 genomes]
rs2353351	0.81[JPT][hapmap]
rs2883142	0.83[AMR][1000 genomes]
rs4732317	0.87[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4732318	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55792279	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55875241	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55924435	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs56977478	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62491077	0.81[AMR][1000 genomes]
rs62491079	0.82[AMR][1000 genomes]
rs62491082	0.81[ASN][1000 genomes]
rs7785428	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138118800-138120000	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr7:138118800-138120200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr7:138119000-138120600	Enhancers	H9 Cell Line	embryonic stem cell
4	chr7:138119200-138120000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:138119200-138120200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:138119200-138120400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:138119400-138120400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr7:138119400-138125800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:138119600-138119800	Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr7:138119600-138120000	Weak transcription	H1 Cell Line	embryonic stem cell

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