Variant report

Variant	rs6973564
Chromosome Location	chr7:124870721-124870722
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-POT1-2	chr7:124869633-124870895	ENSG00000219445
2	lnc-POT1-2	chr7:124870622-124870895	NONHSAT123104
3	lnc-POT1-2	chr7:124869633-124870895	NR_110183

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1086958	0.96[EUR][1000 genomes]
rs1086960	0.94[EUR][1000 genomes]
rs1086961	0.96[EUR][1000 genomes]
rs1086962	0.96[EUR][1000 genomes]
rs1086963	0.96[EUR][1000 genomes]
rs11767601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11770207	0.96[EUR][1000 genomes]
rs11770707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11770950	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13225764	0.98[EUR][1000 genomes]
rs13227708	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13244183	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13245366	0.86[EUR][1000 genomes]
rs13245575	0.94[EUR][1000 genomes]
rs1454127	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34994341	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35520986	0.92[EUR][1000 genomes]
rs35884877	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36038504	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57553642	1.00[EUR][1000 genomes]
rs57954112	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs591396	1.00[CEU][hapmap]
rs62477078	0.98[EUR][1000 genomes]
rs62477083	0.92[EUR][1000 genomes]
rs664775	1.00[CEU][hapmap]
rs792615	1.00[CEU][hapmap]
rs792621	0.96[EUR][1000 genomes]
rs792624	1.00[CEU][hapmap]
rs792629	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs792634	0.96[EUR][1000 genomes]
rs792635	0.94[EUR][1000 genomes]
rs792636	0.96[EUR][1000 genomes]
rs792638	0.96[EUR][1000 genomes]
rs792639	0.96[EUR][1000 genomes]
rs792641	0.96[EUR][1000 genomes]
rs9690529	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394090	chr7:124602150-124900799	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831119	chr7:124714009-124890119	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	esv2422188	chr7:124782873-125254203	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1029627	chr7:124810399-124901651	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2761087	chr7:124823624-125429662	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124869400-124870800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:124869400-124871200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
3	chr7:124869800-124871200	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
4	chr7:124870000-124871400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr7:124870600-124870800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
6	chr7:124870600-124870800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr7:124870600-124871000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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