Variant report

Variant	rs6974064
Chromosome Location	chr7:48380678-48380679
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11972317	0.83[ASN][1000 genomes]
rs11973519	0.82[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs11983883	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1368653	0.82[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs1433517	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1433518	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1433519	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1526093	0.81[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs17132278	0.82[CEU][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs17661752	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17661898	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17661929	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17712791	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1830106	0.81[ASN][1000 genomes]
rs1880739	0.82[CEU][hapmap];0.89[JPT][hapmap]
rs2117090	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34996049	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4145714	0.82[CEU][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs4145715	0.84[ASN][1000 genomes]
rs4342545	0.83[ASN][1000 genomes]
rs4437599	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55869793	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61532297	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62449219	0.90[ASN][1000 genomes]
rs6583405	0.81[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs66509041	0.81[ASN][1000 genomes]
rs67033930	0.90[EUR][1000 genomes]
rs67631839	0.81[ASN][1000 genomes]
rs6946995	0.82[CEU][hapmap]
rs6955132	0.81[CEU][hapmap]
rs6958878	0.81[ASN][1000 genomes]
rs6966454	0.82[CEU][hapmap]
rs73097197	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73097201	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73099309	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73099311	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73099316	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73099324	0.86[ASN][1000 genomes]
rs7780112	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7780299	0.88[EUR][1000 genomes]
rs7784325	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7795985	0.90[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs7803797	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027414	chr7:48117684-48438543	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv817336	chr7:48238233-48563988	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1022980	chr7:48243227-48567060	Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538833	chr7:48243227-48567060	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1022578	chr7:48244414-48584664	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1023575	chr7:48244414-48586685	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1015183	chr7:48244414-48588598	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1032135	chr7:48293104-48414154	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1032221	chr7:48302789-48546684	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv533811	chr7:48313757-48482470	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1015399	chr7:48321542-48544359	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48319800-48382200	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr7:48366000-48381800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr7:48376200-48381800	Weak transcription	Gastric	stomach
4	chr7:48378800-48392800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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