Variant report

Variant	rs6974164
Chromosome Location	chr7:126295016-126295017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126287875..126289715-chr7:126294505..126296060,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10224336	1.00[CHB][hapmap]
rs10225708	1.00[CHB][hapmap]
rs10230311	1.00[EUR][1000 genomes]
rs10240139	1.00[CHB][hapmap]
rs17150099	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17150109	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17683462	1.00[CHB][hapmap]
rs17683715	1.00[CHB][hapmap]
rs17684388	1.00[CHB][hapmap]
rs28453224	1.00[EUR][1000 genomes]
rs28612482	1.00[EUR][1000 genomes]
rs56742825	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57207375	1.00[EUR][1000 genomes]
rs57903513	1.00[EUR][1000 genomes]
rs61757776	1.00[EUR][1000 genomes]
rs61757847	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61758830	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6467087	1.00[JPT][hapmap]
rs6467093	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6467094	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6964279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73720726	1.00[EUR][1000 genomes]
rs73720730	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73720731	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73720733	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73720734	1.00[EUR][1000 genomes]
rs73720737	1.00[EUR][1000 genomes]
rs73720738	1.00[EUR][1000 genomes]
rs73720739	1.00[EUR][1000 genomes]
rs73720740	1.00[EUR][1000 genomes]
rs73720741	1.00[EUR][1000 genomes]
rs73720742	1.00[EUR][1000 genomes]
rs73720746	1.00[EUR][1000 genomes]
rs73722649	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73722651	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7793138	1.00[EUR][1000 genomes]
rs7798942	1.00[MEX][hapmap]
rs7799820	1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032108	chr7:126278349-126362592	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv5939	chr7:126279355-126322778	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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