Variant report

Variant	rs6975640
Chromosome Location	chr7:145543075-145543076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 145 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:139)

rs_ID	r²[population]
rs10500159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11976470	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11978430	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11981181	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17169822	0.92[EUR][1000 genomes]
rs17169901	0.92[EUR][1000 genomes]
rs17169904	0.81[EUR][1000 genomes]
rs17169920	0.89[EUR][1000 genomes]
rs17399452	0.92[EUR][1000 genomes]
rs17399702	0.92[EUR][1000 genomes]
rs17400057	0.89[EUR][1000 genomes]
rs17477958	0.92[EUR][1000 genomes]
rs17478027	0.92[EUR][1000 genomes]
rs17478068	0.92[EUR][1000 genomes]
rs2177426	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4320473	0.92[EUR][1000 genomes]
rs4342507	1.00[EUR][1000 genomes]
rs4392813	0.92[EUR][1000 genomes]
rs4601231	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55744549	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55901953	0.92[EUR][1000 genomes]
rs55928206	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56076558	0.92[EUR][1000 genomes]
rs56096631	0.92[EUR][1000 genomes]
rs56104157	0.92[EUR][1000 genomes]
rs56129818	0.92[EUR][1000 genomes]
rs56207729	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56219655	0.92[EUR][1000 genomes]
rs56325142	0.92[EUR][1000 genomes]
rs56339557	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56357751	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56388832	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57169134	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57475264	0.92[EUR][1000 genomes]
rs57703002	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57903817	0.92[EUR][1000 genomes]
rs58424380	1.00[EUR][1000 genomes]
rs58735852	0.92[EUR][1000 genomes]
rs59126724	0.92[EUR][1000 genomes]
rs59138070	1.00[EUR][1000 genomes]
rs59273605	0.92[EUR][1000 genomes]
rs59452616	0.92[EUR][1000 genomes]
rs59472640	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59488578	0.92[EUR][1000 genomes]
rs59491782	0.92[EUR][1000 genomes]
rs59677597	0.92[EUR][1000 genomes]
rs59696775	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59842185	1.00[EUR][1000 genomes]
rs59950909	0.92[EUR][1000 genomes]
rs60031396	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60166573	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60356490	0.92[EUR][1000 genomes]
rs60445641	0.89[EUR][1000 genomes]
rs60472188	1.00[EUR][1000 genomes]
rs60473071	0.92[EUR][1000 genomes]
rs61482891	0.92[EUR][1000 genomes]
rs61566050	0.92[EUR][1000 genomes]
rs61637054	0.92[EUR][1000 genomes]
rs6464706	0.92[EUR][1000 genomes]
rs6464707	0.92[EUR][1000 genomes]
rs6943520	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6943753	0.92[EUR][1000 genomes]
rs6946760	0.92[EUR][1000 genomes]
rs6952156	0.92[EUR][1000 genomes]
rs6963156	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6970441	0.92[EUR][1000 genomes]
rs6978878	0.92[EUR][1000 genomes]
rs73460940	0.92[EUR][1000 genomes]
rs73460942	0.92[EUR][1000 genomes]
rs73460951	0.92[EUR][1000 genomes]
rs73460952	0.92[EUR][1000 genomes]
rs73460960	0.92[EUR][1000 genomes]
rs73460964	0.92[EUR][1000 genomes]
rs73460965	0.92[EUR][1000 genomes]
rs73460969	0.92[EUR][1000 genomes]
rs73460971	0.92[EUR][1000 genomes]
rs73460973	0.92[EUR][1000 genomes]
rs73460974	0.92[EUR][1000 genomes]
rs73460978	0.92[EUR][1000 genomes]
rs73460980	0.92[EUR][1000 genomes]
rs73460982	0.92[EUR][1000 genomes]
rs73460985	0.92[EUR][1000 genomes]
rs73460986	0.92[EUR][1000 genomes]
rs73460987	0.92[EUR][1000 genomes]
rs73460992	0.92[EUR][1000 genomes]
rs73460995	0.92[EUR][1000 genomes]
rs73460997	0.92[EUR][1000 genomes]
rs73461001	0.92[EUR][1000 genomes]
rs73461002	0.92[EUR][1000 genomes]
rs73462803	0.92[EUR][1000 genomes]
rs73462808	0.92[EUR][1000 genomes]
rs73462811	0.92[EUR][1000 genomes]
rs73462813	0.92[EUR][1000 genomes]
rs73462822	0.92[EUR][1000 genomes]
rs73462824	0.92[EUR][1000 genomes]
rs73462827	0.92[EUR][1000 genomes]
rs73462832	0.92[EUR][1000 genomes]
rs73462837	0.92[EUR][1000 genomes]
rs73462838	0.92[EUR][1000 genomes]
rs73462842	0.92[EUR][1000 genomes]
rs73462845	0.89[EUR][1000 genomes]
rs73462846	0.92[EUR][1000 genomes]
rs73462848	0.92[EUR][1000 genomes]
rs73462850	0.92[EUR][1000 genomes]
rs73736222	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73736236	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73736242	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73736243	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73736244	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73736246	1.00[EUR][1000 genomes]
rs73736250	1.00[EUR][1000 genomes]
rs73736252	1.00[EUR][1000 genomes]
rs73736266	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73736273	0.92[EUR][1000 genomes]
rs73736274	0.92[EUR][1000 genomes]
rs73736275	0.92[EUR][1000 genomes]
rs73738403	0.92[EUR][1000 genomes]
rs73738405	0.92[EUR][1000 genomes]
rs73738406	0.92[EUR][1000 genomes]
rs73738407	0.92[EUR][1000 genomes]
rs73738409	0.92[EUR][1000 genomes]
rs73738418	0.92[EUR][1000 genomes]
rs73738433	0.92[EUR][1000 genomes]
rs73738443	0.92[EUR][1000 genomes]
rs73738446	0.92[EUR][1000 genomes]
rs73738447	0.92[EUR][1000 genomes]
rs73738448	0.92[EUR][1000 genomes]
rs73738453	0.92[EUR][1000 genomes]
rs73738499	0.92[EUR][1000 genomes]
rs73740111	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73740115	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73740116	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7781653	0.92[EUR][1000 genomes]
rs7781948	0.92[EUR][1000 genomes]
rs7785275	0.92[EUR][1000 genomes]
rs7789517	0.92[EUR][1000 genomes]
rs7793538	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7807526	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs866992	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754040	chr7:145303352-145698352	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2755386	chr7:145303352-145698352	Genic enhancers Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv889383	chr7:145396141-145549570	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv831182	chr7:145399806-145556489	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1019118	chr7:145483353-145639795	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:145542400-145543200	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr7:145542800-145544200	Weak transcription	K562	blood

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