Variant report

Variant	rs6977075
Chromosome Location	chr7:137775867-137775868
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POU2F2	chr7:137775817-137776157	GM12891	blood:	n/a	chr7:137775951-137775963 chr7:137775952-137775962 chr7:137775948-137775969 chr7:137775954-137775961 chr7:137775953-137775963 chr7:137775953-137775964 chr7:137775950-137775963 chr7:137775953-137775962 chr7:137775950-137775965 chr7:137775952-137775962 chr7:137775954-137775962 chr7:137775949-137775967
2	ELF1	chr7:137775689-137776096	K562	blood:	n/a	chr7:137775878-137775889 chr7:137775879-137775888 chr7:137775876-137775889 chr7:137775878-137775889
3	MAZ	chr7:137775728-137775896	Hela-S3	cervix:	n/a	n/a
4	RUNX3	chr7:137775690-137776126	GM12878	blood:	n/a	n/a
5	CEBPB	chr7:137775797-137775975	A549	lung:	n/a	n/a
6	POU2F2	chr7:137775775-137776215	GM12891	blood:	n/a	chr7:137775951-137775963 chr7:137775952-137775962 chr7:137775948-137775969 chr7:137775954-137775961 chr7:137775953-137775963 chr7:137775953-137775964 chr7:137775950-137775963 chr7:137775953-137775962 chr7:137775950-137775965 chr7:137775952-137775962 chr7:137775954-137775962 chr7:137775949-137775967
7	RUNX3	chr7:137775676-137776119	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137746837..137750836-chr7:137772601..137775949,4	MCF-7	breast:
2	chr7:137774765..137777637-chr7:138144590..138146200,2	MCF-7	breast:

Variant related genes	Relation type
RN7SKP223	TF binding region
AKR1D1	TF binding region
ENSG00000122779	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10228366	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10228704	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10244249	0.86[ASN][1000 genomes]
rs10244250	0.86[ASN][1000 genomes]
rs10246884	0.90[CEU][hapmap];0.92[EUR][1000 genomes]
rs1025967	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10263205	0.87[ASN][1000 genomes]
rs10264658	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10274304	0.86[ASN][1000 genomes]
rs10280394	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10280628	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1038626	0.84[ASN][1000 genomes]
rs10954602	0.90[CEU][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10954603	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs11982192	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.90[TSI][hapmap];0.86[ASN][1000 genomes]
rs13243992	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1872929	0.84[ASW][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap];0.85[ASN][1000 genomes]
rs1872930	1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap];0.86[ASN][1000 genomes]
rs2035647	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[ASN][1000 genomes]
rs2120846	0.84[ASW][hapmap];0.90[CEU][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2166188	0.84[ASW][hapmap];0.90[CEU][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2306847	1.00[CHB][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.87[ASN][1000 genomes]
rs2859828	0.90[CEU][hapmap];0.94[GIH][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes]
rs3757393	0.86[CEU][hapmap];0.97[GIH][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes]
rs3805360	0.87[ASN][1000 genomes]
rs3805361	0.86[ASN][1000 genomes]
rs3807332	0.90[CEU][hapmap];0.97[GIH][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes]
rs3816829	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3857868	0.83[ASN][1000 genomes]
rs4732285	0.88[CEU][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6945659	0.90[CEU][hapmap];0.97[GIH][hapmap];0.96[MEX][hapmap];0.90[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6954846	0.81[AMR][1000 genomes]
rs6980334	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7780066	0.86[ASN][1000 genomes]
rs7784881	0.90[CEU][hapmap];0.97[GIH][hapmap];0.96[MEX][hapmap];0.90[TSI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7787591	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7795946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9642091	0.81[ASN][1000 genomes]
rs9642092	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv831151	chr7:137711447-137865471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137774200-137776400	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr7:137774800-137776200	Enhancers	Hela-S3	cervix
3	chr7:137775200-137776600	Weak transcription	HepG2	liver
4	chr7:137775600-137776200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:137775600-137776600	Enhancers	GM12878-XiMat	blood
6	chr7:137775600-137780200	Genic enhancers	Liver	Liver

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