Variant report

Variant	rs6977226
Chromosome Location	chr7:105213481-105213482
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:105190304..105192714-chr7:105212686..105215514,2	MCF-7	breast:
2	chr7:105212071..105214763-chr7:105220691..105222275,2	MCF-7	breast:
3	chr7:105212854..105215653-chr7:105216134..105220247,5	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RINT1-3	chr7:105211530-105214107	ENSG00000272604.1

Variant related genes	Relation type
ENSG00000135249	Chromatin interaction
ENSG00000185055	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1706922	1.00[EUR][1000 genomes]
rs1721504	1.00[EUR][1000 genomes]
rs59611877	1.00[EUR][1000 genomes]
rs6954598	1.00[EUR][1000 genomes]
rs6958303	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6958926	1.00[EUR][1000 genomes]
rs6972569	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73720103	1.00[EUR][1000 genomes]
rs7784501	1.00[EUR][1000 genomes]
rs7805216	0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs818622	0.88[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105174200-105213800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:105188000-105214200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:105193200-105221400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:105193200-105221600	Weak transcription	Aorta	Aorta
5	chr7:105196000-105221600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr7:105199400-105221600	Weak transcription	Pancreas	Pancrea
7	chr7:105201000-105217600	Weak transcription	HSMMtube	muscle
8	chr7:105201000-105221600	Weak transcription	Colonic Mucosa	Colon
9	chr7:105202000-105221600	Weak transcription	Esophagus	oesophagus
10	chr7:105205400-105221400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr7:105205600-105221600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr7:105206200-105221600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr7:105206200-105221600	Weak transcription	HUVEC	blood vessel
14	chr7:105206400-105218200	Weak transcription	Colon Smooth Muscle	Colon
15	chr7:105206400-105221400	Weak transcription	Brain Hippocampus Middle	brain
16	chr7:105206400-105221600	Weak transcription	Fetal Kidney	kidney
17	chr7:105206600-105218200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr7:105207000-105221400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr7:105207000-105221400	Weak transcription	Fetal Brain Female	brain
20	chr7:105207000-105221800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr7:105208200-105221600	Weak transcription	HepG2	liver
22	chr7:105208400-105214400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr7:105208400-105221400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr7:105208400-105221600	Weak transcription	NHDF-Ad	bronchial
25	chr7:105208600-105214000	Weak transcription	Stomach Smooth Muscle	stomach
26	chr7:105208600-105217600	Weak transcription	Fetal Lung	lung
27	chr7:105208600-105218800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr7:105208600-105219600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr7:105208600-105221200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr7:105208600-105221400	Weak transcription	Brain Germinal Matrix	brain
31	chr7:105208600-105221400	Weak transcription	NH-A	brain
32	chr7:105208600-105221600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr7:105208600-105221600	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr7:105208600-105221600	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr7:105208600-105221600	Weak transcription	Right Ventricle	heart
36	chr7:105208800-105215200	Weak transcription	Hela-S3	cervix
37	chr7:105208800-105216400	Weak transcription	Ovary	ovary
38	chr7:105208800-105220600	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr7:105209200-105213800	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr7:105209200-105221400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr7:105209200-105221600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr7:105209200-105221600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr7:105209200-105221600	Weak transcription	NHLF	lung
44	chr7:105209400-105214800	Weak transcription	Fetal Intestine Small	intestine
45	chr7:105209400-105220800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr7:105209400-105221600	Weak transcription	Primary B cells from peripheral blood	blood
47	chr7:105209400-105221600	Weak transcription	Left Ventricle	heart
48	chr7:105209600-105213600	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr7:105209600-105217600	Weak transcription	Fetal Muscle Leg	muscle
50	chr7:105209600-105221600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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