Variant report

Variant	rs6977479
Chromosome Location	chr7:126740444-126740445
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10954144	0.91[CEU][hapmap];0.96[EUR][1000 genomes]
rs11563357	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11563719	0.85[EUR][1000 genomes]
rs11563728	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs12375090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361954	0.86[EUR][1000 genomes]
rs17867755	0.94[EUR][1000 genomes]
rs2010184	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2237784	0.92[CEU][hapmap]
rs2237786	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs2237789	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2283093	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs2283095	1.00[CEU][hapmap]
rs2299530	1.00[CEU][hapmap]
rs3808124	0.82[JPT][hapmap]
rs6979572	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2761367	chr7:126717157-126865324	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126735200-126742400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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