Variant report

Variant	rs6977485
Chromosome Location	chr7:137316313-137316314
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137311964..137313853-chr7:137313862..137316637,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10225653	1.00[EUR][1000 genomes]
rs10246705	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10246933	1.00[EUR][1000 genomes]
rs10255024	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10255560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10262164	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10267971	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10272169	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10275097	1.00[EUR][1000 genomes]
rs11489681	1.00[EUR][1000 genomes]
rs11971088	1.00[EUR][1000 genomes]
rs13438478	1.00[EUR][1000 genomes]
rs28366575	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28386845	1.00[EUR][1000 genomes]
rs28447315	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28454188	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28477975	1.00[EUR][1000 genomes]
rs28568341	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28650094	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28666460	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28787723	1.00[EUR][1000 genomes]
rs3778786	1.00[EUR][1000 genomes]
rs3778789	1.00[EUR][1000 genomes]
rs6467711	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6467712	1.00[EUR][1000 genomes]
rs6947756	1.00[EUR][1000 genomes]
rs6963303	1.00[EUR][1000 genomes]
rs6971321	1.00[EUR][1000 genomes]
rs6971485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6971557	1.00[EUR][1000 genomes]
rs6977795	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs706573	1.00[EUR][1000 genomes]
rs706577	1.00[EUR][1000 genomes]
rs7788632	1.00[EUR][1000 genomes]
rs7811058	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7811524	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv1812888	chr7:137283212-137366467	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137277200-137326800	Weak transcription	Osteobl	bone
2	chr7:137282800-137337400	Weak transcription	HSMMtube	muscle
3	chr7:137294000-137328400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:137297600-137324200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr7:137304600-137319200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:137304800-137320000	Weak transcription	Aorta	Aorta
7	chr7:137313200-137328400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:137313600-137321800	Weak transcription	Brain Germinal Matrix	brain

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