Variant report

Variant	rs6977569
Chromosome Location	chr7:48618679-48618680
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2885705	0.88[AFR][1000 genomes]
rs56088216	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56994879	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58217465	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59071247	0.84[AFR][1000 genomes]
rs60781163	1.00[AMR][1000 genomes]
rs61667078	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694652	1.00[AMR][1000 genomes]
rs73694654	1.00[AMR][1000 genomes]
rs73694655	1.00[AMR][1000 genomes]
rs73694657	1.00[AMR][1000 genomes]
rs73694676	0.84[AFR][1000 genomes]
rs73694677	0.84[AFR][1000 genomes]
rs73694679	0.84[AFR][1000 genomes]
rs73694689	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830992	chr7:48497408-48686442	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv888008	chr7:48568425-48652224	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:48600400-48634200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:48606600-48618800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr7:48614600-48618800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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