Variant report

Variant	rs6977858
Chromosome Location	chr7:105484812-105484813
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs142752	0.85[YRI][hapmap]
rs212429	1.00[YRI][hapmap]
rs212434	1.00[YRI][hapmap]
rs212440	1.00[YRI][hapmap]
rs510382	1.00[AMR][1000 genomes]
rs533332	1.00[AMR][1000 genomes]
rs6950432	1.00[AMR][1000 genomes]
rs6958203	1.00[AMR][1000 genomes]
rs6964480	1.00[AMR][1000 genomes]
rs7786261	1.00[AMR][1000 genomes]
rs7793664	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027213	chr7:105438610-106022869	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105465400-105506600	Weak transcription	Fetal Intestine Large	intestine
2	chr7:105472400-105489800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:105473000-105494400	Weak transcription	Fetal Lung	lung
4	chr7:105473200-105490000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr7:105479400-105490000	Weak transcription	NHDF-Ad	bronchial
6	chr7:105479400-105494400	Weak transcription	Brain Angular Gyrus	brain
7	chr7:105479600-105487600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr7:105479600-105489600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:105479600-105489600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:105479600-105489800	Weak transcription	HSMM	muscle
11	chr7:105479600-105494400	Weak transcription	Fetal Kidney	kidney
12	chr7:105479600-105506200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr7:105479800-105489800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr7:105480000-105487600	Weak transcription	Aorta	Aorta
15	chr7:105480000-105489000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:105480000-105489200	Weak transcription	Gastric	stomach
17	chr7:105480000-105489200	Weak transcription	Left Ventricle	heart
18	chr7:105480000-105489200	Weak transcription	Right Ventricle	heart
19	chr7:105480000-105489600	Weak transcription	A549	lung
20	chr7:105480000-105490000	Weak transcription	Stomach Mucosa	stomach
21	chr7:105480000-105492800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr7:105480000-105494400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr7:105480000-105494400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr7:105480000-105494400	Weak transcription	Brain Substantia Nigra	brain
25	chr7:105480000-105494400	Weak transcription	Osteobl	bone
26	chr7:105480000-105494800	Weak transcription	Brain Anterior Caudate	brain
27	chr7:105480000-105515600	Weak transcription	Ovary	ovary
28	chr7:105480600-105489200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr7:105480600-105489200	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr7:105480600-105494200	Weak transcription	Brain Germinal Matrix	brain
31	chr7:105481000-105494400	Weak transcription	Fetal Brain Female	brain
32	chr7:105481200-105486600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr7:105481200-105489200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr7:105481200-105489200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr7:105481200-105489200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr7:105481400-105486600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr7:105481400-105488000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr7:105481400-105488800	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr7:105481400-105489000	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr7:105481600-105487800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr7:105481800-105489200	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr7:105481800-105489200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr7:105482200-105489200	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr7:105482200-105506400	Weak transcription	Psoas Muscle	Psoas
45	chr7:105482400-105486800	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr7:105482400-105494200	Weak transcription	Placenta	Placenta
47	chr7:105482600-105489200	Weak transcription	Spleen	Spleen
48	chr7:105482600-105489600	Weak transcription	Esophagus	oesophagus
49	chr7:105482600-105490000	Weak transcription	Stomach Smooth Muscle	stomach
50	chr7:105482600-105490600	Weak transcription	Colon Smooth Muscle	Colon

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