Variant report

Variant	rs6977892
Chromosome Location	chr7:6556220-6556221
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:6555645..6556331-chr7:6598481..6599481,2	MCF-7	breast:
2	chr7:6533124..6534031-chr7:6555653..6556241,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10447683	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11764642	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2347781	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6977870	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948912	chr7:5803903-6623553	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv1034060	chr7:5814823-6745710	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
3	nsv538711	chr7:5814823-6745710	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
4	nsv1028242	chr7:5819084-6645024	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
5	nsv538712	chr7:5819084-6645024	Weak transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
6	nsv949531	chr7:5949371-6753694	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
7	nsv1020236	chr7:6248930-6690377	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv497874	chr7:6296768-6614902	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
9	nsv1026878	chr7:6490387-6592374	Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
10	nsv830895	chr7:6514781-6722092	Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
11	nsv887429	chr7:6520676-6659509	Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
12	nsv887430	chr7:6520676-6668027	Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
13	nsv508444	chr7:6534110-6700527	Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
14	nsv1025220	chr7:6534278-6736802	Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
15	nsv538717	chr7:6534278-6736802	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
16	nsv887431	chr7:6535517-6690240	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
17	nsv515978	chr7:6535517-6698905	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
18	nsv887432	chr7:6535517-6713985	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6545600-6556400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:6556000-6556400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
3	chr7:6556000-6556400	Active TSS	Primary T cells from cord blood	blood
4	chr7:6556000-6556400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
5	chr7:6556000-6556400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr7:6556000-6556400	Active TSS	Fetal Kidney	kidney
7	chr7:6556000-6556400	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr7:6556000-6556600	Flanking Active TSS	Primary B cells from cord blood	blood
9	chr7:6556000-6556600	Flanking Active TSS	Primary B cells from peripheral blood	blood
10	chr7:6556000-6556600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:6556000-6556600	Enhancers	Brain Germinal Matrix	brain
12	chr7:6556000-6556600	Flanking Active TSS	Fetal Thymus	thymus
13	chr7:6556000-6556600	Active TSS	Stomach Smooth Muscle	stomach
14	chr7:6556200-6556400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr7:6556200-6556400	Enhancers	H1 Cell Line	embryonic stem cell
16	chr7:6556200-6556400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr7:6556200-6556400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr7:6556200-6556400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:6556200-6556400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr7:6556200-6556400	Active TSS	HUES6 Cell Line	embryonic stem cell
21	chr7:6556200-6556400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:6556200-6556400	Active TSS	iPS-18 Cell Line	embryonic stem cell
23	chr7:6556200-6556400	Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr7:6556200-6556400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr7:6556200-6556400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr7:6556200-6556400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
27	chr7:6556200-6556400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
28	chr7:6556200-6556400	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr7:6556200-6556400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr7:6556200-6556400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
31	chr7:6556200-6556400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr7:6556200-6556400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr7:6556200-6556400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr7:6556200-6556400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr7:6556200-6556400	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
36	chr7:6556200-6556400	Enhancers	Brain Angular Gyrus	brain
37	chr7:6556200-6556400	Flanking Active TSS	Colonic Mucosa	Colon
38	chr7:6556200-6556400	Flanking Active TSS	Fetal Brain Female	brain
39	chr7:6556200-6556400	Enhancers	Fetal Intestine Large	intestine
40	chr7:6556200-6556400	Flanking Active TSS	Fetal Intestine Small	intestine
41	chr7:6556200-6556400	Enhancers	Fetal Lung	lung
42	chr7:6556200-6556400	Flanking Active TSS	Fetal Muscle Trunk	muscle
43	chr7:6556200-6556400	Flanking Active TSS	Placenta	Placenta
44	chr7:6556200-6556400	Enhancers	Gastric	stomach
45	chr7:6556200-6556400	Enhancers	Psoas Muscle	Psoas
46	chr7:6556200-6556400	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 31	rectum
47	chr7:6556200-6556400	Genic enhancers	Right Atrium	heart
48	chr7:6556200-6556400	Enhancers	Spleen	Spleen
49	chr7:6556200-6556400	Enhancers	GM12878-XiMat	blood
50	chr7:6556200-6556400	Enhancers	HMEC	breast

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