Variant report

Variant	rs6979572
Chromosome Location	chr7:126721926-126721927
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126719826..126721988-chr7:126731679..126734281,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1006728	0.89[CHB][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];0.93[JPT][hapmap];0.86[MEX][hapmap]
rs10225883	0.89[CHB][hapmap];0.97[GIH][hapmap];0.80[JPT][hapmap];0.86[MEX][hapmap]
rs10954144	0.91[CEU][hapmap];0.89[CHB][hapmap];0.85[CHD][hapmap];0.93[JPT][hapmap];0.94[TSI][hapmap];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11563357	1.00[CEU][hapmap]
rs11563708	0.93[JPT][hapmap]
rs11563717	0.93[JPT][hapmap]
rs11563719	0.93[JPT][hapmap];0.81[TSI][hapmap];0.86[EUR][1000 genomes]
rs11563728	0.92[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11760208	0.93[JPT][hapmap];0.81[TSI][hapmap]
rs12375090	1.00[CEU][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes]
rs1361954	0.86[JPT][hapmap];0.87[EUR][1000 genomes]
rs1361963	0.86[JPT][hapmap]
rs1419424	0.82[CHD][hapmap];0.93[JPT][hapmap]
rs1419446	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs17864136	0.93[JPT][hapmap]
rs17864137	0.93[JPT][hapmap]
rs17867755	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1894731	0.95[CHB][hapmap];0.93[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2010184	1.00[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap]
rs2237780	0.89[CHB][hapmap];0.82[CHD][hapmap];0.94[TSI][hapmap]
rs2237784	0.92[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.80[GIH][hapmap];0.93[JPT][hapmap];0.97[TSI][hapmap]
rs2237786	0.92[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.80[GIH][hapmap];0.93[JPT][hapmap];0.97[TSI][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2237789	1.00[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap]
rs2237790	0.84[CHB][hapmap];0.84[CHD][hapmap];0.93[JPT][hapmap];0.90[TSI][hapmap]
rs2237791	0.93[JPT][hapmap];0.81[TSI][hapmap]
rs2237792	0.93[JPT][hapmap]
rs2283090	0.94[ASW][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.93[MEX][hapmap];0.87[MKK][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2283091	0.95[CHB][hapmap];0.93[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2283092	0.94[ASW][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.93[MEX][hapmap];0.87[MKK][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2283093	0.92[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2283095	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap]
rs2283096	0.93[JPT][hapmap]
rs2299525	0.83[CHB][hapmap];0.81[CHD][hapmap];0.97[GIH][hapmap];0.80[JPT][hapmap];0.86[MEX][hapmap]
rs2299530	1.00[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap]
rs2299535	0.93[JPT][hapmap]
rs2299537	0.93[JPT][hapmap];0.81[TSI][hapmap]
rs2299538	0.93[JPT][hapmap];0.81[TSI][hapmap]
rs2299539	0.93[JPT][hapmap]
rs2299541	0.93[JPT][hapmap];0.81[TSI][hapmap]
rs3808122	0.89[CHB][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];0.93[JPT][hapmap];0.86[MEX][hapmap]
rs3808127	0.89[CHB][hapmap];0.80[JPT][hapmap]
rs3824009	0.87[TSI][hapmap]
rs4141410	0.86[JPT][hapmap]
rs6942923	0.95[CHB][hapmap];0.93[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6949620	0.93[JPT][hapmap]
rs6964926	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs6975798	0.86[JPT][hapmap]
rs6977479	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6978939	0.95[CHB][hapmap];0.93[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6979287	0.89[ASW][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.91[LWK][hapmap];0.86[MEX][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7778276	0.86[JPT][hapmap]
rs7778308	0.89[CHB][hapmap];0.82[CHD][hapmap];0.80[JPT][hapmap]
rs7791539	0.82[CHD][hapmap];0.93[JPT][hapmap]
rs7792406	0.86[JPT][hapmap]
rs951111	0.89[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831121	chr7:126593363-126774413	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv889189	chr7:126699088-126963028	Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2761367	chr7:126717157-126865324	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126721600-126722000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:126721800-126722000	Enhancers	Brain Anterior Caudate	brain

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