Variant report

Variant	rs6980515
Chromosome Location	chr8:63051905-63051906
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10504344	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12544805	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34250977	0.99[EUR][1000 genomes]
rs4256587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4268118	1.00[EUR][1000 genomes]
rs4317559	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4383956	0.98[EUR][1000 genomes]
rs4445217	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4562310	1.00[EUR][1000 genomes]
rs4610738	1.00[EUR][1000 genomes]
rs4738938	1.00[EUR][1000 genomes]
rs4738939	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7462666	0.91[EUR][1000 genomes]
rs7832144	0.99[EUR][1000 genomes]
rs7841863	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890955	chr8:62919691-63062581	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63051000-63053000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr8:63051200-63052800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr8:63051200-63052800	Enhancers	A549	lung
4	chr8:63051200-63052800	Enhancers	HepG2	liver
5	chr8:63051600-63052000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr8:63051600-63052600	Enhancers	Brain Cingulate Gyrus	brain
7	chr8:63051800-63052200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr8:63051800-63052200	Flanking Active TSS	Brain Anterior Caudate	brain
9	chr8:63051800-63052200	Flanking Active TSS	Brain Substantia Nigra	brain
10	chr8:63051800-63052400	Flanking Active TSS	Brain Hippocampus Middle	brain
11	chr8:63051800-63052600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:63051800-63053000	Enhancers	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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