Variant report

Variant	rs6982041
Chromosome Location	chr8:103139433-103139434
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103133340..103138063-chr8:103138855..103142733,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104490	Chromatin interaction
ENSG00000266756	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10093024	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1037701	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10955282	0.81[ASN][1000 genomes]
rs1111911	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1148514	0.86[ASN][1000 genomes]
rs1148516	0.86[ASN][1000 genomes]
rs1148517	0.85[ASN][1000 genomes]
rs1148519	0.83[ASN][1000 genomes]
rs1265119	0.82[ASN][1000 genomes]
rs1265122	0.86[ASN][1000 genomes]
rs1265124	0.86[ASN][1000 genomes]
rs13268773	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1547370	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1892965	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2051274	0.83[ASN][1000 genomes]
rs2387095	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4291239	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4734053	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4734616	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62524263	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6468817	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6468818	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6980613	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6992948	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7000087	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7000803	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7819114	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7826028	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9942800	0.96[ASN][1000 genomes]
rs9942801	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9942805	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891233	chr8:103001914-103162638	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv891235	chr8:103032394-103162638	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv891239	chr8:103056517-103162638	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv891240	chr8:103070301-103162638	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	esv2754264	chr8:103070824-103170824	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
6	nsv891241	chr8:103079505-103162638	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1020359	chr8:103109921-103318415	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
8	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103136400-103140200	Weak transcription	NHEK	skin
2	chr8:103136800-103140200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:103136800-103140200	Weak transcription	Osteobl	bone
4	chr8:103137000-103140200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:103137000-103140200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:103137000-103140200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:103137000-103140400	Weak transcription	HSMM	muscle
8	chr8:103137000-103140400	Weak transcription	NH-A	brain
9	chr8:103137000-103140400	Weak transcription	NHLF	lung
10	chr8:103137000-103140600	Weak transcription	Lung	lung
11	chr8:103137000-103140600	Weak transcription	Psoas Muscle	Psoas
12	chr8:103137000-103140800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:103137000-103140800	Weak transcription	Left Ventricle	heart
14	chr8:103137000-103140800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr8:103137000-103140800	Weak transcription	Right Atrium	heart
16	chr8:103137200-103140200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr8:103137200-103140200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr8:103137400-103140200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr8:103137400-103140200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr8:103137400-103140200	Weak transcription	Esophagus	oesophagus
21	chr8:103137400-103140200	Weak transcription	Fetal Kidney	kidney
22	chr8:103137400-103140200	Weak transcription	Fetal Muscle Trunk	muscle
23	chr8:103137400-103140800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr8:103137400-103140800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr8:103137600-103140000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr8:103137600-103140200	Weak transcription	Fetal Muscle Leg	muscle
27	chr8:103137600-103140200	Weak transcription	NHDF-Ad	bronchial
28	chr8:103137600-103140600	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr8:103137600-103140600	Weak transcription	Fetal Lung	lung
30	chr8:103137800-103140200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr8:103137800-103140600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr8:103137800-103140600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr8:103138800-103140400	Weak transcription	GM12878-XiMat	blood
34	chr8:103139000-103140000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr8:103139400-103139600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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