Variant report

Variant	rs6983120
Chromosome Location	chr8:36138034-36138035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1107566	0.82[AFR][1000 genomes]
rs1107567	0.89[YRI][hapmap];0.84[AFR][1000 genomes]
rs1107568	0.84[AFR][1000 genomes]
rs16884825	0.89[YRI][hapmap]
rs16884876	0.82[AFR][1000 genomes]
rs16884883	0.82[AFR][1000 genomes]
rs16884894	0.82[AFR][1000 genomes]
rs16884902	0.81[AFR][1000 genomes]
rs41408344	0.82[AFR][1000 genomes]
rs73578572	0.82[AFR][1000 genomes]
rs73586355	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586366	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73592013	0.86[AFR][1000 genomes]
rs7819939	0.84[AFR][1000 genomes]
rs7831591	0.82[AFR][1000 genomes]
rs7834732	0.82[AFR][1000 genomes]
rs7835665	0.82[AFR][1000 genomes]
rs879317	0.83[AFR][1000 genomes]
rs879318	1.00[ASW][hapmap];0.85[MKK][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1024552	chr8:35655964-36210907	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv539548	chr8:35655964-36210907	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv890718	chr8:35948467-36224134	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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