Variant report

Variant	rs6983369
Chromosome Location	chr8:110188943-110188944
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:110187579..110189456-chr8:110191000..110193987,2	K562	blood:
2	chr8:110176070..110178321-chr8:110188614..110190804,2	K562	blood:
3	chr8:110187579..110190023-chr8:110192487..110194344,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRHR-1	chr8:110188878-110189374	NONHSAT128286

Extended variants
information (count: 205 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:203)

rs_ID	r²[population]
rs10081564	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10088496	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10089544	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10091155	0.90[ASN][1000 genomes]
rs10100690	0.88[ASN][1000 genomes]
rs10101048	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10101050	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10101189	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10101520	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10464819	0.85[ASN][1000 genomes]
rs10464848	0.85[ASN][1000 genomes]
rs10464849	0.85[ASN][1000 genomes]
rs10955508	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10955510	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10955511	0.90[ASN][1000 genomes]
rs10955512	0.91[ASN][1000 genomes]
rs10955513	0.89[ASN][1000 genomes]
rs10955514	0.85[ASN][1000 genomes]
rs11775991	0.91[ASN][1000 genomes]
rs11785243	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11985765	0.90[ASN][1000 genomes]
rs11986161	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11992816	0.90[ASN][1000 genomes]
rs11994164	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11994227	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11995419	0.90[ASN][1000 genomes]
rs11997974	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12542811	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12542959	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12544150	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12544503	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12546169	0.83[ASN][1000 genomes]
rs12546985	0.85[ASN][1000 genomes]
rs12549347	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12549397	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12550383	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12674513	0.85[ASN][1000 genomes]
rs12674533	0.85[ASN][1000 genomes]
rs12675753	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12679958	0.89[ASN][1000 genomes]
rs12680451	0.90[ASN][1000 genomes]
rs12680886	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12682610	0.90[ASN][1000 genomes]
rs13251321	0.89[ASN][1000 genomes]
rs13251597	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs13265151	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13282488	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1380096	0.82[ASN][1000 genomes]
rs1380097	0.82[ASN][1000 genomes]
rs1380098	0.85[ASN][1000 genomes]
rs1380099	0.88[ASN][1000 genomes]
rs1458915	0.82[ASN][1000 genomes]
rs1458916	0.82[ASN][1000 genomes]
rs1458917	0.82[ASN][1000 genomes]
rs1458921	0.85[ASN][1000 genomes]
rs1458922	0.83[ASN][1000 genomes]
rs1458924	0.85[ASN][1000 genomes]
rs1458925	0.85[ASN][1000 genomes]
rs1458926	0.85[ASN][1000 genomes]
rs1458927	0.84[ASN][1000 genomes]
rs1548082	0.85[ASN][1000 genomes]
rs1548083	0.85[ASN][1000 genomes]
rs1585295	0.89[ASN][1000 genomes]
rs1585296	0.83[ASN][1000 genomes]
rs1585297	0.82[ASN][1000 genomes]
rs17364037	0.85[ASN][1000 genomes]
rs1947630	0.85[ASN][1000 genomes]
rs1947631	0.85[ASN][1000 genomes]
rs2007179	0.88[ASN][1000 genomes]
rs2054255	0.85[ASN][1000 genomes]
rs2067780	0.85[ASN][1000 genomes]
rs2125512	0.87[ASN][1000 genomes]
rs2168965	0.87[ASN][1000 genomes]
rs2199122	0.83[ASN][1000 genomes]
rs28407429	0.90[ASN][1000 genomes]
rs28413119	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28437828	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2882176	0.85[ASN][1000 genomes]
rs28870477	0.85[ASN][1000 genomes]
rs2926191	0.84[ASN][1000 genomes]
rs2926192	0.84[ASN][1000 genomes]
rs2926198	0.85[ASN][1000 genomes]
rs2926199	0.85[ASN][1000 genomes]
rs2926202	0.85[ASN][1000 genomes]
rs2926203	0.85[ASN][1000 genomes]
rs2926204	0.85[ASN][1000 genomes]
rs2926209	0.85[ASN][1000 genomes]
rs2926213	0.85[ASN][1000 genomes]
rs2926216	0.85[ASN][1000 genomes]
rs2926217	0.85[ASN][1000 genomes]
rs2926218	0.87[ASN][1000 genomes]
rs2926220	0.85[ASN][1000 genomes]
rs2926222	0.82[ASN][1000 genomes]
rs2926223	0.85[ASN][1000 genomes]
rs2926254	0.80[ASN][1000 genomes]
rs2926255	0.80[ASN][1000 genomes]
rs2926256	0.80[ASN][1000 genomes]
rs2926257	0.82[ASN][1000 genomes]
rs2926258	0.82[ASN][1000 genomes]
rs2926261	0.82[ASN][1000 genomes]
rs2926264	0.82[ASN][1000 genomes]
rs2926268	0.83[ASN][1000 genomes]
rs2926270	0.83[ASN][1000 genomes]
rs2926271	0.83[ASN][1000 genomes]
rs2926273	0.83[ASN][1000 genomes]
rs2926275	0.83[ASN][1000 genomes]
rs2926276	0.83[ASN][1000 genomes]
rs2926283	0.84[ASN][1000 genomes]
rs2980587	0.85[ASN][1000 genomes]
rs2980588	0.85[ASN][1000 genomes]
rs2980590	0.85[ASN][1000 genomes]
rs2980592	0.85[ASN][1000 genomes]
rs2980595	0.85[ASN][1000 genomes]
rs2980596	0.85[ASN][1000 genomes]
rs2980598	0.85[ASN][1000 genomes]
rs2980599	0.85[ASN][1000 genomes]
rs2980601	0.85[ASN][1000 genomes]
rs2980603	0.85[ASN][1000 genomes]
rs2980604	0.85[ASN][1000 genomes]
rs2980605	0.84[ASN][1000 genomes]
rs2980608	0.84[ASN][1000 genomes]
rs2980609	0.85[ASN][1000 genomes]
rs2980610	0.80[ASN][1000 genomes]
rs2980612	0.83[ASN][1000 genomes]
rs2980613	0.83[ASN][1000 genomes]
rs2980615	0.83[ASN][1000 genomes]
rs2980616	0.83[ASN][1000 genomes]
rs2980617	0.83[ASN][1000 genomes]
rs2980618	0.83[ASN][1000 genomes]
rs2980622	0.83[ASN][1000 genomes]
rs2980624	0.81[ASN][1000 genomes]
rs2980629	0.82[ASN][1000 genomes]
rs2980633	0.82[ASN][1000 genomes]
rs2980635	0.85[ASN][1000 genomes]
rs34049275	0.90[ASN][1000 genomes]
rs34979579	0.80[ASN][1000 genomes]
rs35850605	0.90[ASN][1000 genomes]
rs35978837	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3890699	0.89[ASN][1000 genomes]
rs4130640	0.89[ASN][1000 genomes]
rs4236803	0.90[ASN][1000 genomes]
rs4236804	0.89[ASN][1000 genomes]
rs4257986	0.89[ASN][1000 genomes]
rs4265160	0.90[ASN][1000 genomes]
rs4273834	0.85[ASN][1000 genomes]
rs4288351	0.90[ASN][1000 genomes]
rs4291240	0.85[ASN][1000 genomes]
rs4311632	0.89[ASN][1000 genomes]
rs4332104	0.89[ASN][1000 genomes]
rs4339614	0.89[ASN][1000 genomes]
rs4358779	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4389899	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4389900	0.89[ASN][1000 genomes]
rs4428648	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4439099	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4442117	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4443632	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4454252	0.90[ASN][1000 genomes]
rs4529440	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4570131	0.90[ASN][1000 genomes]
rs4604407	0.87[ASN][1000 genomes]
rs4645539	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4734196	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4734197	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4734198	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4734203	0.90[ASN][1000 genomes]
rs4734204	0.90[ASN][1000 genomes]
rs4734205	0.85[ASN][1000 genomes]
rs4734209	0.81[ASN][1000 genomes]
rs4734210	0.85[ASN][1000 genomes]
rs4735097	0.85[ASN][1000 genomes]
rs4735098	0.85[ASN][1000 genomes]
rs4735108	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4735109	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4735110	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4735114	0.90[ASN][1000 genomes]
rs4735116	0.88[ASN][1000 genomes]
rs4735118	0.87[ASN][1000 genomes]
rs4735121	0.86[ASN][1000 genomes]
rs4735122	0.85[ASN][1000 genomes]
rs55765942	0.85[ASN][1000 genomes]
rs56896876	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62511091	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6469245	0.88[ASN][1000 genomes]
rs6983376	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6985869	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6986127	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6988041	0.86[ASN][1000 genomes]
rs6990140	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6994788	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6998731	0.90[ASN][1000 genomes]
rs6998883	0.90[ASN][1000 genomes]
rs7004206	0.82[ASN][1000 genomes]
rs7008174	0.86[ASN][1000 genomes]
rs7010380	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs720574	0.82[ASN][1000 genomes]
rs7817746	0.90[ASN][1000 genomes]
rs7817909	0.90[ASN][1000 genomes]
rs7825689	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7829544	0.85[ASN][1000 genomes]
rs7845815	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs922044	0.88[ASN][1000 genomes]
rs9297421	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023204	chr8:110169573-110303085	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1031663	chr8:110177432-110303085	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110186000-110192200	Weak transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links