Variant report
| Variant | rs6983490 |
|---|---|
| Chromosome Location | chr8:54452352-54452353 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-RGS20-3 | chr8:54451652-54452860 | NONHSAT126601 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10093917 | 0.95[EUR][1000 genomes] |
| rs12114990 | 0.87[EUR][1000 genomes] |
| rs1551906 | 0.89[EUR][1000 genomes] |
| rs1551907 | 0.89[EUR][1000 genomes] |
| rs1551908 | 0.89[EUR][1000 genomes] |
| rs1871093 | 0.89[EUR][1000 genomes] |
| rs28414831 | 0.91[EUR][1000 genomes] |
| rs28448344 | 0.89[EUR][1000 genomes] |
| rs28498249 | 0.89[EUR][1000 genomes] |
| rs28679737 | 0.93[EUR][1000 genomes] |
| rs6473849 | 0.89[EUR][1000 genomes] |
| rs6473873 | 0.84[EUR][1000 genomes] |
| rs6987393 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7008567 | 0.89[EUR][1000 genomes] |
| rs7009706 | 0.95[EUR][1000 genomes] |
| rs7011096 | 0.89[EUR][1000 genomes] |
| rs73680192 | 0.95[EUR][1000 genomes] |
| rs73680445 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73680446 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73682504 | 0.91[EUR][1000 genomes] |
| rs73682506 | 0.91[EUR][1000 genomes] |
| rs73682527 | 0.86[EUR][1000 genomes] |
| rs7825111 | 0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2752674 | chr8:54181147-54483747 | Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv971308 | chr8:54448965-54454234 | Enhancers ZNF genes & repeats Active TSS Weak transcription | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
