Variant report

Variant	rs6983664
Chromosome Location	chr8:63791916-63791917
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10095936	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10216382	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10957250	0.84[ASN][1000 genomes]
rs1350055	0.83[ASN][1000 genomes]
rs1350056	0.83[ASN][1000 genomes]
rs2168318	0.83[ASN][1000 genomes]
rs28516791	0.81[ASN][1000 genomes]
rs4307337	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4446730	0.81[ASN][1000 genomes]
rs4554461	0.85[ASN][1000 genomes]
rs6983938	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6984039	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7016805	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7018000	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7826606	0.81[ASN][1000 genomes]
rs7836848	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs979262	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831341	chr8:63658694-63852213	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1033527	chr8:63673915-64073735	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv890962	chr8:63708519-63812686	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63782000-63792200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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