Variant report

Variant	rs6984065
Chromosome Location	chr8:11035427-11035428
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17152978	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17726352	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2409732	1.00[ASN][1000 genomes]
rs7000298	0.87[ASN][1000 genomes]
rs7010126	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv1815171	chr8:10940039-11128712	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1025426	chr8:10942929-11037903	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1026331	chr8:10955941-11046394	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	nsv519941	chr8:11016889-11039816	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11026800-11037200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:11026800-11043600	Weak transcription	Pancreas	Pancrea
3	chr8:11026800-11043800	Weak transcription	Spleen	Spleen
4	chr8:11028000-11048200	Weak transcription	Primary B cells from cord blood	blood
5	chr8:11028200-11050200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr8:11028200-11052400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr8:11028200-11056600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr8:11028800-11054400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:11029200-11039400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:11029200-11039600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr8:11029400-11035600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:11029600-11056800	Weak transcription	Fetal Intestine Small	intestine
13	chr8:11031400-11054200	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr8:11032000-11053800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr8:11032400-11042800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr8:11033400-11039600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr8:11034200-11035600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr8:11034200-11035600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr8:11034200-11035600	Enhancers	Gastric	stomach
20	chr8:11034400-11035600	Enhancers	Lung	lung
21	chr8:11034400-11035800	Enhancers	NH-A	brain
22	chr8:11034600-11054400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr8:11034600-11057000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr8:11034600-11057000	Weak transcription	Esophagus	oesophagus
25	chr8:11034800-11035800	Enhancers	HSMMtube	muscle
26	chr8:11034800-11036000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr8:11035000-11035600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr8:11035000-11035800	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr8:11035000-11035800	Enhancers	Primary B cells from peripheral blood	blood
30	chr8:11035000-11035800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr8:11035000-11036000	Enhancers	Muscle Satellite Cultured Cells	--
32	chr8:11035200-11035600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
33	chr8:11035200-11035600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr8:11035200-11035600	Enhancers	Placenta Amnion	Placenta Amnion
35	chr8:11035200-11035600	Enhancers	GM12878-XiMat	blood
36	chr8:11035200-11035600	Flanking Active TSS	HSMM	muscle
37	chr8:11035200-11035600	Enhancers	NHEK	skin
38	chr8:11035200-11035800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr8:11035200-11035800	Enhancers	HMEC	breast
40	chr8:11035200-11036000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr8:11035200-11038400	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr8:11035400-11035600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr8:11035400-11035600	Enhancers	Left Ventricle	heart
44	chr8:11035400-11035800	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr8:11035400-11035800	Enhancers	HUVEC	blood vessel
46	chr8:11035400-11054600	Weak transcription	H1 Cell Line	embryonic stem cell

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