Variant report

Variant	rs6984853
Chromosome Location	chr8:125622062-125622063
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125621598..125623778-chr8:125643368..125646296,3	K562	blood:
2	chr8:125621974..125624358-chr8:125624517..125626808,3	MCF-7	breast:
3	chr8:125621603..125623262-chr8:125633980..125636812,2	K562	blood:
4	chr8:125620520..125623570-chr8:125628485..125632186,3	MCF-7	breast:
5	chr8:125621765..125624512-chr8:125677163..125680023,2	MCF-7	breast:
6	chr8:125617349..125622220-chr8:125623810..125627112,5	K562	blood:
7	chr8:125621328..125624098-chr8:125728501..125730943,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170873	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10505448	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs11994513	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs11994520	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs11995300	0.82[EUR][1000 genomes]
rs1808600	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2014895	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28379655	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4870908	0.89[EUR][1000 genomes]
rs4870910	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs4870911	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs4870912	0.83[EUR][1000 genomes]
rs4870913	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs4871516	0.83[EUR][1000 genomes]
rs4871517	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs62530668	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62530669	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62530670	0.83[EUR][1000 genomes]
rs6989466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs752492	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7816697	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs919544	0.86[CHB][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9297695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9297696	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs9987267	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9987275	0.87[CEU][hapmap];0.83[EUR][1000 genomes]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125603400-125625800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr8:125610600-125622800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:125613200-125622800	Weak transcription	Gastric	stomach
4	chr8:125614000-125628800	Enhancers	Liver	Liver
5	chr8:125614200-125622400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:125614400-125627400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:125614800-125625600	Enhancers	Fetal Muscle Leg	muscle
8	chr8:125615400-125622800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr8:125616000-125630200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr8:125617200-125622200	Enhancers	Right Atrium	heart
11	chr8:125617400-125626000	Weak transcription	Fetal Intestine Small	intestine
12	chr8:125617400-125626200	Enhancers	Fetal Thymus	thymus
13	chr8:125617600-125625000	Enhancers	Fetal Brain Male	brain
14	chr8:125617600-125627000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr8:125617600-125627400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr8:125617600-125631400	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr8:125617800-125622400	Weak transcription	Fetal Stomach	stomach
18	chr8:125617800-125622600	Weak transcription	NHDF-Ad	bronchial
19	chr8:125617800-125623000	Enhancers	Brain Hippocampus Middle	brain
20	chr8:125617800-125623600	Enhancers	Brain Cingulate Gyrus	brain
21	chr8:125617800-125628600	Enhancers	Primary B cells from peripheral blood	blood
22	chr8:125618000-125622200	Enhancers	Brain Germinal Matrix	brain
23	chr8:125618000-125623600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr8:125618000-125624400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr8:125618000-125626200	Enhancers	Thymus	Thymus
26	chr8:125618000-125632800	Weak transcription	HUVEC	blood vessel
27	chr8:125618000-125640400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr8:125618200-125624200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr8:125618600-125623400	Enhancers	Right Ventricle	heart
30	chr8:125618600-125626200	Enhancers	Fetal Heart	heart
31	chr8:125618800-125626200	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr8:125619000-125622200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr8:125619200-125622200	Weak transcription	Fetal Lung	lung
34	chr8:125619200-125630800	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr8:125619200-125649000	Weak transcription	Colonic Mucosa	Colon
36	chr8:125619400-125622400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr8:125619400-125622800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr8:125619400-125623000	Weak transcription	Lung	lung
39	chr8:125619400-125627200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr8:125619400-125627200	Weak transcription	HepG2	liver
41	chr8:125619400-125628400	Weak transcription	Fetal Kidney	kidney
42	chr8:125620000-125623200	Weak transcription	Fetal Muscle Trunk	muscle
43	chr8:125620000-125624400	Weak transcription	Primary hematopoietic stem cells	blood
44	chr8:125620400-125624000	Enhancers	Primary B cells from cord blood	blood
45	chr8:125620600-125622200	Weak transcription	Brain Anterior Caudate	brain
46	chr8:125620600-125622400	Weak transcription	Adipose Nuclei	Adipose
47	chr8:125620800-125622800	Weak transcription	Psoas Muscle	Psoas
48	chr8:125620800-125625200	Weak transcription	Placenta	Placenta
49	chr8:125620800-125625400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr8:125620800-125625600	Weak transcription	HMEC	breast

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