Variant report

Variant	rs6985434
Chromosome Location	chr8:99015375-99015376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:99006609..99009034-chr8:99014356..99016713,2	MCF-7	breast:
2	chr8:99014119..99017352-chr8:99021059..99024142,3	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10106983	0.95[ASN][1000 genomes]
rs10955140	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10955143	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10955144	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12549307	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12676252	0.95[ASN][1000 genomes]
rs13270713	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2034780	0.98[ASN][1000 genomes]
rs36191777	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4735521	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv528695	chr8:98960813-99022009	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:98992600-99019400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr8:99008200-99015400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:99008400-99045000	Weak transcription	Colonic Mucosa	Colon
4	chr8:99009000-99016800	Weak transcription	Placenta	Placenta
5	chr8:99009000-99030000	Weak transcription	Pancreas	Pancrea
6	chr8:99009000-99030200	Weak transcription	Esophagus	oesophagus
7	chr8:99009600-99022600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr8:99010000-99015400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr8:99012000-99017200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr8:99012000-99028800	Weak transcription	Aorta	Aorta
11	chr8:99012000-99032000	Weak transcription	Gastric	stomach
12	chr8:99012400-99028800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr8:99013400-99015400	Enhancers	Brain Angular Gyrus	brain
14	chr8:99013800-99015600	Enhancers	Brain Anterior Caudate	brain
15	chr8:99013800-99018600	Weak transcription	Fetal Intestine Small	intestine
16	chr8:99014000-99022400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr8:99014200-99015400	Enhancers	Brain Substantia Nigra	brain
18	chr8:99014200-99025400	Genic enhancers	Fetal Muscle Leg	muscle
19	chr8:99014200-99029600	Weak transcription	Fetal Intestine Large	intestine
20	chr8:99014400-99015800	Genic enhancers	Fetal Muscle Trunk	muscle
21	chr8:99014400-99018000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr8:99014600-99015600	Weak transcription	Spleen	Spleen
23	chr8:99014600-99016000	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr8:99014600-99016800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr8:99014600-99017200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr8:99014600-99019600	Weak transcription	Liver	Liver
27	chr8:99014600-99019800	Weak transcription	Fetal Lung	lung
28	chr8:99014600-99020000	Weak transcription	HSMM	muscle
29	chr8:99014600-99021200	Enhancers	Brain Cingulate Gyrus	brain
30	chr8:99014600-99021400	Enhancers	Brain Hippocampus Middle	brain
31	chr8:99014800-99016000	Strong transcription	Duodenum Mucosa	Duodenum
32	chr8:99014800-99017400	Weak transcription	Ovary	ovary
33	chr8:99014800-99018000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr8:99014800-99018000	Weak transcription	Adipose Nuclei	Adipose
35	chr8:99014800-99018200	Weak transcription	NH-A	brain
36	chr8:99014800-99022600	Strong transcription	Placenta Amnion	Placenta Amnion
37	chr8:99014800-99023000	Weak transcription	Colon Smooth Muscle	Colon
38	chr8:99015000-99016600	Weak transcription	Osteobl	bone
39	chr8:99015000-99017200	Weak transcription	NHLF	lung
40	chr8:99015000-99017800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr8:99015000-99018200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr8:99015000-99019800	Weak transcription	NHDF-Ad	bronchial
43	chr8:99015000-99020000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr8:99015000-99034400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr8:99015200-99015400	Enhancers	H1 Cell Line	embryonic stem cell
46	chr8:99015200-99015400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr8:99015200-99016400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr8:99015200-99016600	Strong transcription	Fetal Stomach	stomach
49	chr8:99015200-99017000	Weak transcription	Right Atrium	heart
50	chr8:99015200-99022000	Weak transcription	Stomach Smooth Muscle	stomach

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