Variant report

Variant	rs6985532
Chromosome Location	chr8:99847836-99847837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:99842115..99843872-chr8:99847802..99849376,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891218	chr8:99507313-99906221	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1027025	chr8:99672977-100115315	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv539690	chr8:99672977-100115315	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv891220	chr8:99681858-99867419	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv1031089	chr8:99715785-100399935	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	esv3357563	chr8:99846837-99848644	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99837800-99848600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr8:99838800-99862800	Weak transcription	Ovary	ovary
3	chr8:99844200-99848200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:99844600-99848200	Enhancers	HMEC	breast
5	chr8:99844800-99848600	Enhancers	Placenta	Placenta
6	chr8:99845000-99848200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr8:99847200-99857200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr8:99847400-99848000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr8:99847400-99848000	ZNF genes & repeats	HSMMtube	muscle
10	chr8:99847400-99848000	Flanking Active TSS	NHEK	skin
11	chr8:99847400-99848200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr8:99847400-99848800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:99847600-99848000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:99847600-99848000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:99847600-99848000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr8:99847600-99848000	Enhancers	A549	lung
17	chr8:99847600-99848000	Flanking Active TSS	Hela-S3	cervix
18	chr8:99847600-99848200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr8:99847600-99848200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr8:99847600-99848200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr8:99847600-99848200	Enhancers	Esophagus	oesophagus
22	chr8:99847600-99848200	ZNF genes & repeats	Fetal Intestine Large	intestine
23	chr8:99847600-99848600	ZNF genes & repeats	Fetal Intestine Small	intestine
24	chr8:99847600-99848800	Enhancers	HepG2	liver
25	chr8:99847800-99848200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr8:99847800-99848400	Weak transcription	Duodenum Mucosa	Duodenum
27	chr8:99847800-99849000	Enhancers	Dnd41	blood
28	chr8:99847800-99849200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr8:99847800-99855000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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