Variant report

Variant	rs6985771
Chromosome Location	chr8:100862145-100862146
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:100860578..100862343-chr8:100868176..100871124,2	K562	blood:
2	chr8:100854767..100857053-chr8:100859524..100862402,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7003135	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033944	chr8:100737321-100916345	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv1830910	chr8:100791156-101114794	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv3437523	chr8:100860176-100864574	Strong transcription Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv396852	chr8:100862138-100862205	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:100814200-100872400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr8:100816800-100865800	Weak transcription	Left Ventricle	heart
3	chr8:100816800-100866200	Weak transcription	Pancreas	Pancrea
4	chr8:100817600-100872400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr8:100818400-100865800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr8:100819000-100865800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr8:100820200-100874000	Weak transcription	Colonic Mucosa	Colon
8	chr8:100822200-100865600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr8:100826400-100865200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr8:100830400-100872200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr8:100832400-100872800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr8:100833800-100865400	Weak transcription	NHLF	lung
13	chr8:100835400-100869200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr8:100835600-100872200	Weak transcription	Brain Substantia Nigra	brain
15	chr8:100842800-100866200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr8:100843200-100865000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr8:100843200-100866200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr8:100843200-100873800	Weak transcription	Esophagus	oesophagus
19	chr8:100844800-100865800	Weak transcription	Fetal Intestine Small	intestine
20	chr8:100844800-100872400	Weak transcription	Brain Hippocampus Middle	brain
21	chr8:100845400-100872000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr8:100845800-100866200	Weak transcription	Brain Anterior Caudate	brain
23	chr8:100845800-100872000	Weak transcription	NH-A	brain
24	chr8:100846400-100872000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr8:100846400-100903800	Weak transcription	Stomach Mucosa	stomach
26	chr8:100848200-100865800	Weak transcription	Liver	Liver
27	chr8:100848200-100872000	Weak transcription	Brain Angular Gyrus	brain
28	chr8:100848400-100865800	Weak transcription	Brain Germinal Matrix	brain
29	chr8:100849200-100871000	Weak transcription	Fetal Kidney	kidney
30	chr8:100850200-100887600	Weak transcription	Psoas Muscle	Psoas
31	chr8:100852200-100874000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr8:100852400-100871600	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr8:100853400-100865200	Weak transcription	Rectal Smooth Muscle	rectum
34	chr8:100853400-100874200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr8:100854400-100871800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr8:100855800-100865800	Weak transcription	Ovary	ovary
37	chr8:100856000-100865800	Weak transcription	Fetal Thymus	thymus
38	chr8:100856000-100874200	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr8:100856600-100872200	Weak transcription	K562	blood
40	chr8:100856600-100874000	Weak transcription	Right Ventricle	heart
41	chr8:100857000-100862200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr8:100857200-100862200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr8:100857400-100862200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr8:100857600-100864400	Weak transcription	Colon Smooth Muscle	Colon
45	chr8:100858000-100866200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr8:100858200-100865200	Weak transcription	Spleen	Spleen
47	chr8:100858200-100871800	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr8:100858600-100865400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr8:100858600-100865600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr8:100858600-100865600	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links