Variant report

Variant	rs6987252
Chromosome Location	chr8:34179752-34179753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1551654	0.94[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs16881977	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2168962	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2590467	0.89[EUR][1000 genomes]
rs2590468	0.89[EUR][1000 genomes]
rs2590469	0.97[ASN][1000 genomes]
rs2590476	0.89[EUR][1000 genomes]
rs2590479	0.89[EUR][1000 genomes]
rs2609620	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2609627	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2609633	0.98[ASN][1000 genomes]
rs2609649	0.89[EUR][1000 genomes]
rs2609650	0.88[EUR][1000 genomes]
rs2609651	0.89[EUR][1000 genomes]
rs2719277	0.89[EUR][1000 genomes]
rs2719278	0.89[EUR][1000 genomes]
rs2719288	0.90[EUR][1000 genomes]
rs2719305	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2719310	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2719311	0.81[AFR][1000 genomes]
rs2719312	0.92[EUR][1000 genomes]
rs2719320	1.00[ASN][1000 genomes]
rs2719321	1.00[ASN][1000 genomes]
rs2719322	1.00[ASN][1000 genomes]
rs2719329	0.89[EUR][1000 genomes]
rs28404543	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2953926	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2953927	0.84[EUR][1000 genomes]
rs2953929	0.99[ASN][1000 genomes]
rs2953930	0.84[EUR][1000 genomes]
rs2953931	0.84[EUR][1000 genomes]
rs2953932	0.84[EUR][1000 genomes]
rs2953934	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2953935	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2959322	0.84[EUR][1000 genomes]
rs2959323	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2959325	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2978835	0.84[EUR][1000 genomes]
rs2978837	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4327859	0.89[EUR][1000 genomes]
rs4739544	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs978438	0.89[EUR][1000 genomes]
rs978439	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610931	chr8:34176474-34226215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34178200-34180000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:34179000-34180600	Enhancers	Fetal Intestine Large	intestine
3	chr8:34179400-34180000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr8:34179600-34180000	Enhancers	Fetal Lung	lung

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