Variant report

Variant	rs6989067
Chromosome Location	chr8:48278772-48278773
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:48276921..48279533-chr8:48290586..48293171,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10090708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10094689	1.00[AFR][1000 genomes]
rs10104642	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10105470	1.00[YRI][hapmap]
rs10110049	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs10111833	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10111963	1.00[AMR][1000 genomes]
rs11993708	0.92[AFR][1000 genomes]
rs28382309	0.92[AFR][1000 genomes]
rs28393034	0.93[YRI][hapmap]
rs28408352	1.00[AFR][1000 genomes]
rs28439682	1.00[AMR][1000 genomes]
rs28533391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28587193	0.92[AFR][1000 genomes]
rs28812531	0.92[AFR][1000 genomes]
rs28897086	0.92[AFR][1000 genomes]
rs6992748	1.00[AMR][1000 genomes]
rs6994360	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7003614	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7014936	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs7821542	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs7831198	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9657080	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015347	chr8:47698082-48318579	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv539593	chr8:47698082-48318579	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
3	esv3693377	chr8:47824261-48582964	Genic enhancers Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv491863	chr8:48053825-48586176	Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	esv2758155	chr8:48188989-48321308	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2759610	chr8:48188989-48321308	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv1817304	chr8:48205314-48321308	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1034660	chr8:48265109-48411279	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:48248800-48309600	Weak transcription	Thymus	Thymus
2	chr8:48249200-48282000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:48256400-48281000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr8:48262400-48309600	Weak transcription	Fetal Stomach	stomach
5	chr8:48263200-48297200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr8:48265600-48280200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:48266600-48278800	Weak transcription	Colon Smooth Muscle	Colon
8	chr8:48266600-48297200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:48266800-48280200	Weak transcription	Primary B cells from cord blood	blood
10	chr8:48266800-48290200	Weak transcription	HSMMtube	muscle
11	chr8:48266800-48297000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr8:48267000-48295400	Weak transcription	HSMM	muscle
13	chr8:48267800-48295000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:48269800-48281200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr8:48270000-48282000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr8:48272200-48280400	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr8:48272400-48279600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr8:48272400-48281800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr8:48274000-48279400	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr8:48274200-48282400	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr8:48274600-48279000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr8:48274800-48279200	Enhancers	Adipose Nuclei	Adipose
23	chr8:48274800-48279800	Weak transcription	Aorta	Aorta
24	chr8:48274800-48281600	Weak transcription	GM12878-XiMat	blood
25	chr8:48275000-48281000	Weak transcription	Primary B cells from peripheral blood	blood
26	chr8:48275400-48279400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr8:48276000-48280400	Enhancers	Fetal Intestine Large	intestine
28	chr8:48276200-48278800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr8:48276200-48278800	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr8:48276200-48278800	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr8:48276200-48279000	Enhancers	Left Ventricle	heart
32	chr8:48276200-48279600	Enhancers	Liver	Liver
33	chr8:48276200-48280400	Enhancers	Small Intestine	intestine
34	chr8:48276200-48283000	Enhancers	Fetal Lung	lung
35	chr8:48276400-48280400	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr8:48276600-48280400	Enhancers	Stomach Mucosa	stomach
37	chr8:48276600-48280800	Enhancers	Pancreas	Pancrea
38	chr8:48276800-48279000	Enhancers	Primary T cells fromperipheralblood	blood
39	chr8:48276800-48279000	Enhancers	Spleen	Spleen
40	chr8:48276800-48279000	Enhancers	Dnd41	blood
41	chr8:48276800-48279200	Enhancers	Lung	lung
42	chr8:48277000-48279800	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr8:48277200-48279000	Enhancers	A549	lung
44	chr8:48277200-48285600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr8:48277400-48278800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
46	chr8:48277400-48279000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr8:48277600-48278800	Weak transcription	Colonic Mucosa	Colon
48	chr8:48277600-48279000	Enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr8:48277600-48279600	Enhancers	Rectal Mucosa Donor 29	rectum
50	chr8:48277600-48280200	Enhancers	Fetal Intestine Small	intestine

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