Variant report

Variant	rs6989626
Chromosome Location	chr8:49988616-49988617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11996121	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13439096	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16939320	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16939468	0.86[AMR][1000 genomes]
rs6992736	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7003799	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7009653	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73579344	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73579346	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73579377	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73579384	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73579385	1.00[EUR][1000 genomes]
rs7813871	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7821013	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7829947	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7844223	0.93[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025068	chr8:49953397-50370208	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	esv3401785	chr8:49986448-50018640	Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49984600-49991400	Weak transcription	K562	blood
2	chr8:49987200-49998800	Weak transcription	Psoas Muscle	Psoas
3	chr8:49988000-49989400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr8:49988600-49989000	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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