Variant report
Variant | rs6989827 |
---|---|
Chromosome Location | chr8:103142448-103142449 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
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No data |
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Variant related genes | Relation type |
---|---|
ENSG00000266756 | Chromatin interaction |
ENSG00000104490 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10089333 | 0.84[AFR][1000 genomes] |
rs10093024 | 0.82[JPT][hapmap] |
rs10095155 | 0.87[ASN][1000 genomes] |
rs10103532 | 0.81[CHB][hapmap] |
rs1111911 | 0.82[JPT][hapmap];0.80[ASN][1000 genomes] |
rs1111912 | 0.89[CEU][hapmap];0.85[CHB][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs13268773 | 0.82[JPT][hapmap];0.81[ASN][1000 genomes] |
rs1547370 | 0.80[ASN][1000 genomes] |
rs1892965 | 0.82[JPT][hapmap];0.81[ASN][1000 genomes] |
rs2105615 | 0.82[JPT][hapmap] |
rs4291239 | 0.82[JPT][hapmap];0.80[ASN][1000 genomes] |
rs4734053 | 0.82[JPT][hapmap];0.81[ASN][1000 genomes] |
rs4734616 | 0.81[ASN][1000 genomes] |
rs57688017 | 0.84[AFR][1000 genomes] |
rs6468815 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6468817 | 0.80[ASN][1000 genomes] |
rs6468818 | 0.82[JPT][hapmap];0.80[ASN][1000 genomes] |
rs6980591 | 0.89[YRI][hapmap] |
rs6980613 | 0.82[JPT][hapmap];0.80[ASN][1000 genomes] |
rs7000087 | 0.81[ASN][1000 genomes] |
rs7000803 | 0.81[CEU][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes] |
rs7819114 | 0.80[ASN][1000 genomes] |
rs7822831 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7826028 | 0.82[JPT][hapmap];0.81[ASN][1000 genomes] |
rs9297318 | 0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9942800 | 0.81[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv891233 | chr8:103001914-103162638 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv891235 | chr8:103032394-103162638 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv891239 | chr8:103056517-103162638 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
4 | nsv891240 | chr8:103070301-103162638 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
5 | esv2754264 | chr8:103070824-103170824 | Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
6 | nsv891241 | chr8:103079505-103162638 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
7 | nsv1020359 | chr8:103109921-103318415 | Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
8 | nsv1033829 | chr8:103110057-103525696 | Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:103141200-103142800 | Enhancers | NHDF-Ad | bronchial |
2 | chr8:103141400-103142600 | Enhancers | Foreskin Fibroblast Primary Cells skin01 | Skin |
3 | chr8:103141600-103142800 | Enhancers | NHEK | skin |
4 | chr8:103142000-103142600 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |