Variant report
| Variant | rs6989872 |
|---|---|
| Chromosome Location | chr8:49965936-49965937 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:49957437..49960901-chr8:49963560..49965969,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11988057 | 1.00[AMR][1000 genomes] |
| rs11989446 | 1.00[AMR][1000 genomes] |
| rs11989489 | 1.00[AMR][1000 genomes] |
| rs11990190 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11990660 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11992534 | 1.00[AMR][1000 genomes] |
| rs11996810 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16939327 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16939335 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16939391 | 1.00[AMR][1000 genomes] |
| rs16939404 | 1.00[AMR][1000 genomes] |
| rs16939407 | 1.00[AMR][1000 genomes] |
| rs16939409 | 1.00[AMR][1000 genomes] |
| rs16939472 | 1.00[AMR][1000 genomes] |
| rs6980664 | 1.00[AMR][1000 genomes] |
| rs6986206 | 0.85[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs6991176 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6997593 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7005086 | 1.00[AMR][1000 genomes] |
| rs7017854 | 1.00[AMR][1000 genomes] |
| rs7842971 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1025068 | chr8:49953397-50370208 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:49965200-49966600 | Weak transcription | Hela-S3 | cervix |
