Variant report

Variant	rs6993807
Chromosome Location	chr8:63434800-63434801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16918927	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929168	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929206	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929234	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929308	1.00[EUR][1000 genomes]
rs16929351	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16929371	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16929390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16929430	1.00[EUR][1000 genomes]
rs16929437	1.00[EUR][1000 genomes]
rs2127581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57900808	1.00[EUR][1000 genomes]
rs58717549	1.00[EUR][1000 genomes]
rs73264897	1.00[EUR][1000 genomes]
rs73266909	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024863	chr8:63275987-63439650	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv539636	chr8:63275987-63439650	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv831339	chr8:63312449-63501127	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63428800-63443600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:63432000-63437200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr8:63433800-63437400	Enhancers	Fetal Intestine Large	intestine
4	chr8:63434200-63434800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:63434200-63436200	Weak transcription	Pancreas	Pancrea
6	chr8:63434200-63436600	Enhancers	Fetal Intestine Small	intestine
7	chr8:63434400-63435400	Weak transcription	Adipose Nuclei	Adipose
8	chr8:63434800-63435600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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